Gene detail

Gene detail information of Glyur000722s00018854

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21580.1	3.00E-98	cobalt ion transmembrane transporters
NR	XP_004486103.1	4.72E-180	PREDICTED: protein ABCI12, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_007169885.1	3.00E-40	cobalt transport protein [Halothece sp. PCC 7418]
Swissprot	tr\|Q944H2\|AB12I_ARATH	2.00E-133	Protein ABCI12, chloroplastic (Precursor)
trEMBL	tr\|V7BRZ5\|V7BRZ5_PHAVU	1.00E-173	Uncharacterized protein {ECO:0000313\|EMBL:ESW19793.1}

Sequence

Transcript Sequence

>Glyur000722s00018854.1
CACAAGACTCGGCTTCATGCTTTGATGTTCATGTTACCCATTGAGCCGCAAAACCGCCAACCCACCTCGTTACTGGTTAAGCAGTNCTTAATCTTCCGCTGCTCAACCTCAAACGAAACAACACCTGTTCCTGAAGCCATTGATTATCTCAATTATTGCATGAAATCCACACGTCTTGCCTTACTCCATCTCCTTCTCCTTCTCAATCAACACCCATGAGCTGTAACCATGCCACCTTCCTCTTGGTCGCTTTGCCATCACCACCTTTGCCCTCAAGTCGTGNGCATTTCCCAAAACGAAACCACTGTGCATTCCCNGTGCCAAAGAAAACCCTATTGGCAGCAGCGAAGGCGAGGAAGACGAGCTTTCGAATTAGAGCTTCAAAGGATGGGAATGGCGAATCGGCGGATTGGTACTCCCNTTGGCTCCCCTCCAGCTCTTTCGCTGCTGATAAAGTTTTCAGATTGATTGCCAGTGCCACAGCCAGTCCCATTGGCCAGTTCGTATCTTCACCCACCACGTTTCTTCACTCCATCGACCCTCGGGTCAAATTGGTATGGCTTTTAGTTCTGGTTGTTCTACCGGCAAGGTCACATATANTTATGCGATTTGGATTAGTAATATACTTGACTTTGCTTTCAATTTGGATTCTACCAAGAAATGCTTGGATGGATCAATTGGGACGAGTTTATTTGCTATCGGGATTGTTATTCATGACATTAGGGTTGGGTTCAGATGGTTATTCATATGTAATCATGAAGTTAGGTCCATTAGCCTTTACGAGGAAAGGCTTATCTGTGGCAAGCACTGTTGCTTGTTTGACTTTNACAGTATTTCAAAGTGCAAGTCTCTGCCTCACAACCACAACCCCTGAACAACTAGCATTTGCATTGCGATGGTTTATGCTTCCTCTGAGATACATAGGTGTATCTGTATCAGAAATTGTGCTTACCCTTTTACTGTCATTGAGGTTTATCAATCTTGTTTTTGACGAGGTCCGAAATATTGCTTTGGGAATTGTATCTCGTCGGGTAGATTGGAAACAGCTGACTGTTATGGAGACAATTGATATTTTCTTTAACTACTTCCGGCGCATCTTCAAAAACATTTTCAGCCATGCNGAGCAAATTTCTCAGGCTATGATAGTCAGAGGTTTTAAAGGGGACGTTGGCGCTCATAAAATTTATTTCTTGTCAGAATCATCTTTTGGGATGGCAGATATTGAGCTGGTCTTCTTTCTGAGTACTACCTTGTCTAATGAGATATGCCACTCTTGCATCGACTCTCTTAAGGAGACACTTCAGCTTGTCTCTTGCATAAGGTGGCTGTAGAAAGCTTGTTCAGCTGCTGCAAAGTGATTTNTTTGGGAATAAATGGCAAAGAAAATGTGCAGCAAAGAAGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00722	117808	122956	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000722s00018854.1	PF02361.11	CbiQ	101	316	4.40E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.634
SRR1783600	control	13.690
SRR1783602	moderate drought stress	10.962
SRR1811619	moderate drought stress	10.326

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.519
DRR006520	Root Summer glycyrrhizin high producing strain	12.175
DRR006521	Root Winter glycyrrhizin high producing strain	8.654
DRR006522	Root Winter glycyrrhizin high producing strain	8.045
DRR006523	Root Summer glycyrrhizin low producing strain	8.487
DRR006524	Root Summer glycyrrhizin low producing strain	7.788
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.748
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.202

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.894
SRR2868004	Drought Stress (root)	10.052
SRR2967015	Control (root)	10.440

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.618
SRR9715740	Leaf	15.107
SRR9715741	Leaf	15.674
SRR9715739	Root	2.962
SRR9715742	Root	4.726
SRR9715743	Root	5.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.905
SRR8749028	MeJA induced 9h	5.595
SRR8749029	MeJA induced 9h	2.820
SRR8749030	Uninduced	1.606
SRR8749031	Uninduced	0.377
SRR8749032	Uninduced	0.765

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.268
SRR8400027	Control - Root	15.337