Gene detail

Gene detail information of Glyur000721s00027419

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14490.1	1.00E-27	SMAD/FHA domain-containing protein
NR	XP_004505100.1	2.56E-121	PREDICTED: FHA domain-containing protein At4g14490-like [Cicer arietinum]
COG	YP_001277143.1	1.00E-06	FHA domain-containing protein [Roseiflexus sp. RS-1]
Swissprot	tr\|O23305\|Y4449_ARATH	1.00E-42	FHA domain-containing protein At4g14490
trEMBL	tr\|A0A072UYP1\|A0A072UYP1_MEDTR	9.00E-86	FHA domain plant protein {ECO:0000313\|EMBL:KEH30970.1}

Sequence

Transcript Sequence

>Glyur000721s00027419.1
ATGCTCCAAGGCCCTCGCCAAGGGGAAGTCNTCGAGTTCCGACCCGGATCCGCCATCCGAATCGGTCGGGTCGTCCGCGGCAACACNCTCCCCATCAAGGACCCCGGCATCTCCACCAAACACCTCTCCATCCTCTCCGAATCCGGCAAGTGGGTCCTCCGTGACCTCGACTCCTCAAACGGCACCGTTTTCGACGACACCAAGATCCCTCCCAATGTCCCCCTCCCCCTCCGCGACGGCTCCACCATCAAGATCGGTGAAGTCACCTCCATCCTCGTCACCTTCCTCAACACCCAACACAACCCCACCCGTCCCACTCGAACCGGATCCGTAACCATCCTCGAACCGGGTCCAGACACCGAGGACCCTTCTGAACCCGTGGCCAAACCGGTTCGGGGTAGAAGAGGTAAGGGCGGTTTAAAGGGTAGGGTTCAGATTCAGGGCATTGACGAAAACGCGAGCGTAAACGAATCCGGGCATGTGGATCGACCCGCTCCCGCTCGGGTAACACGGAATTCGAAGAATACGAGGAGCGCGAACGATGATGAGAAGGTGGAAGGACCCGAGAACAACACGCGGGTGACCCGGAATTTGAAGAACAAGCGGAGTGCGATTGAGAATTCTGATTCGAGCATTAAGAAGAATTCGGATGGTCCAGAAGAGAAGGNGGAACTGGAAGAGCCGAAGAACACACGGGTGACCCGGAATTCGAAGAACAAGCAGAGCGTGGTTGAGGCTTCTGATTTGGATGCTCCGAACGAGACGTTGGAAGAACCGAAGAAGAATACGAGGGTGACCCGAAACTCGAAGAACAAGGGGAGTGTGATTGGGGAAAATTCAAGGTTGGAGAATGTTGAGAAGAAGAAAATGAGGGGTGGTGCCAAGGGGAGGAAACAAAAGGAAAAGTGTGTTGGTGCTGCTGCTGCTGGTGGTGGTAAAGAGACTTGTGATGATGGGAGAGAAAAGGAGAATTTGAATGGGGATGAGAGTGGGAATTGGCCTGATTTGGAGAAGTTGAGTCTGGGTGAGTGGTTTGATTTCTTGGAAGTTCACTTGCCAAAACAGATAATTGATGCAACTGAGGAGATGTTTGATTCCATGAGGCAGAAAGCTGAGAGACTCCGCGAGTACATCACAACGCAGCAAGAGAATCACAAGGTTGAAGTGCCCGTGGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00721	89428	90606	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000721s00027419.1	PF00498.21	FHA	20	86	7.70E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.377
SRR1783600	control	3.346
SRR1783602	moderate drought stress	2.289
SRR1811619	moderate drought stress	2.285

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.896
DRR006520	Root Summer glycyrrhizin high producing strain	1.827
DRR006521	Root Winter glycyrrhizin high producing strain	0.284
DRR006522	Root Winter glycyrrhizin high producing strain	0.276
DRR006523	Root Summer glycyrrhizin low producing strain	1.478
DRR006524	Root Summer glycyrrhizin low producing strain	1.744
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.670
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.547

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.347
SRR2868004	Drought Stress (root)	2.804
SRR2967015	Control (root)	3.430

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.269
SRR9715740	Leaf	0.647
SRR9715741	Leaf	0.680
SRR9715739	Root	2.321
SRR9715742	Root	0.645
SRR9715743	Root	1.029

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.528
SRR8749028	MeJA induced 9h	1.222
SRR8749029	MeJA induced 9h	0.657
SRR8749030	Uninduced	0.099
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.051
SRR8400027	Control - Root	4.534