Gene detail

Gene detail information of Glyur000721s00027414

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33860.1	9.00E-62	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
NR	XP_003529354.1	0	PREDICTED: auxin response factor 3-like [Glycine max]
Swissprot	tr\|Q0JKI9\|ARFB_ORYSJ	2.00E-80	Auxin response factor 2
trEMBL	tr\|K7L2T6\|K7L2T6_SOYBN	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000721s00027414.1
GGANAAGGAGATCAAGGGTGAAGAGAGTGAGTGGGAATGGGGTGACCTTAATTTCCAAATAAAAAAAANAAGATATGTACATTAATCAGCAGAAGGATAGGTGTGAGATTTGGTGAAATAGAAGGGGACAGAATAGACATCCGCCCGGAAATACAGGGAGGCCGTACGGTCTTAAACAACACAAACAAAAGTGAGTCACTCCTTACTACAGTACAGTTTTGTTCTTGTAGCTTTCCTCTCTCTCCCCACTTTCTCTCTCTCTCTCTCTCTCTGTCTCTGCCACACATCACACCCAACAGTCTCAGCATTGCAGCAGCTGCAACACTGCTGCAGCTTCGGCATGCAGACGAGCAAGCAAAAGGGCAAACTACCAATAATAATTAACAATTAGTAATAATTTAAAAAAGGGTAAAAGCAGTAAAAAAATTGATTATCTTTTCTTTTTTGTTTGTAAAAAAAAACCCATTTTTATGAGACTCCAATATGCAAGCTTGATTTGATGCCTACCCCAAAAATCCATTCACTCTCTTCTCTTCTCTCCACTCCACTCCAGGCGAAAAATAAAGTAAAAGGAAAGAAGCCCGAAAAAGAAACAAAAGGAAAAATTGGCAGAGAGTGATAGCTCAGTGGAGGGTGTAGGGGGAGAGAGACAGAGAAAGAGGGTCTCTTTCTTTTTGGAGTATTGGGTCAGGTTCTTTTGACAATGCCAAAGTTGGTCACGCTCTCTGAAAATGCAGGCATGAAACCACTCCTTCAAGTACCTCACTCTTCTCTCCCCTGCAACTGCAACAACAACTTCACTTTTCTCCTCACAAGATTCCCCACCCCTCTCTTCTCTCCATGGCGGGCTTAATCGATCTCAACACCACCGAGGACGATGAAACGCCGTCGTCTGCTTACTCCTCCGGCACCAGCACGGGTAGTGCCTCTGCCTCTGCTTCCTCTGTTTGCTTGGAGCTGTGGCACGCGTGTGCGGGTCCAATGATCTCGTTGCCTAAGAAAGGAAGCGTTGTTGTGTACTTCCCTCAGGGACACTTGGAGCACCTTCACGATTTCCCACTCTCTTTCTGTGATAACATCCCTTCCCATGTGTTCTGTCGCGTCGTTGATGTCAAGCTTCATGCAGAGGAAGGGAGCGATGAAGTGTATTGCCAGGTGTTGTTGGTTCCTGAAAGTGAGGGGTGATGATGGAGAATTGAGGTTGGGAATCCGTAGGGCGGCTCAATTGAAAAGTTGCAGTACCTTTTCATCTCTCTCTGGCCAGCAATTGAATCTTAGCAGCCTTACGGATTTGGTCAATGCTTTATCTACAAGATGTGCCTTTAGCATTCACTATAATCCGAGGGTAAGCTCATCTGAGTTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCTTATTCAGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTCACAGGATTAATTATTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAAATGCCTACTGGTAAGGTGGGATGACTTAGAAGCCACGAGGCATAACAGGGTTTCCCCATGGGAGATTGAGCCATCTGGTTCTGCTTCCACTGCCAATAACTTGATGACAGTTAGTTTGAAGAGGACCAAGATTGGGTTGCCTTCTGCAAAGCTAGAATTTCCAGTTCCCAATGGGATTGGGACATCAGACTTTGGGGAATCACCAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTGATACTACTTTTGAAAGTATCAGTGCTCAGAAGAGTCACCAGTTATCTGAATTAAGGAGGTGCTATCCTGGTTCGAACTGCCCCGGGATTGCTGCAACAGGAAATAGCATCAGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTACTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGAAGAGCCTTGTCTGTTGATGAGGCTTGTGGAAATGGTCGCTTTGGAATTTTTGATGGTTACCAGGTGCTGAGATCAAGAAATGGATGGTCTTCCCAGATGAGTAACAATTCTCATTTGCATCCATCTGTTCCGGCTGGGCAAGTCTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTCAATCCGGTTTTGAACTCGGATTACAATNACAAAATTAATCAGGCGATGGAGGGTAACGCCCATCAACGAGGTTCATATGCTTCTGAAGTGAAAGGNGGTGCATTTGTGTCATCCCTCTCTTATGAGCCTATTTTGCGTGGGCCAGCTCAGGAAGACAGAAATCCATTCGGTATGTTAAATGCACCTAATCAGCTGGATAGTTCGCGTTCACATGATTCAATTTCAGTACAGAGAGGCAGTCAAGAGTTGGTTTCCTCGTGTAAAAGTAGCTGCAGAGTCTTCGGTTTTTCATTAACCGAGGGTGCTGCCATTGCAAATAAAGAGGTTGATCCATCTGCAGCCACTTCTTGTCAACTAGATNCTGGACCCTCCTTCGCAAGACATGTTGAAGATGATTTCCATCCAAGACATTCACTTAGGAGCAAGGTGGTTGAAAGTTATTGNACCAAAGGTGTGCTGCAGTGTTGACTTAAAAATCATGATGTATGCTAACACTGAAGCTGGCTTGAGGTAGCAGAAGAGAATGTCTATAGTTGTTGTTCTTATGTGCTCAATTTGCTGTAATAACTTAAGATATTGGGAACAAAAAAATATTGTTGTAAACTATTCGCCAAATTTAGACATTAATCTTAAATTGGCTATGACCACATTCAAGTTCATGTATTGGCTATGACCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00721	67842	73800	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000721s00027414.1	PF06507.8	Auxin_resp	70	150	8.70E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.048
SRR1783600	control	23.124
SRR1783602	moderate drought stress	23.506
SRR1811619	moderate drought stress	23.332

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.290
DRR006520	Root Summer glycyrrhizin high producing strain	30.787
DRR006521	Root Winter glycyrrhizin high producing strain	7.630
DRR006522	Root Winter glycyrrhizin high producing strain	7.420
DRR006523	Root Summer glycyrrhizin low producing strain	17.390
DRR006524	Root Summer glycyrrhizin low producing strain	17.438
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.496
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.415

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.045
SRR2868004	Drought Stress (root)	12.049
SRR2967015	Control (root)	12.934

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.935
SRR9715740	Leaf	4.236
SRR9715741	Leaf	4.768
SRR9715739	Root	15.193
SRR9715742	Root	16.504
SRR9715743	Root	16.696

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.162
SRR8749028	MeJA induced 9h	0.722
SRR8749029	MeJA induced 9h	0.583
SRR8749030	Uninduced	0.367
SRR8749031	Uninduced	0.241
SRR8749032	Uninduced	0.930

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.555
SRR8400027	Control - Root	26.232