Gene detail information of Glyur000721s00027402 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23770.1 | 2.00E-175 | O-Glycosyl hydrolases family 17 protein |
| NR | XP_004505110.1 | 0 | PREDICTED: probable glucan endo-1,3-beta-glucosidase A6-like [Cicer arietinum] |
| Swissprot | tr|Q06915|EA6_ARATH | 0 | Probable glucan endo-1,3-beta-glucosidase A6 (Precursor) |
| trEMBL | tr|A0A072UMR3|A0A072UMR3_MEDTR | 0 | Glucan endo-1,3-beta-glucosidase-like protein {ECO:0000313|EMBL:KEH30957.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00721 | 8315 | 10715 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17,CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000721s00027402.1 | PF00332.13 | Glyco_hydro_17 | 24 | 347 | 7.60E-102 |
| Glyur000721s00027402.1 | PF07983.8 | X8 | 374 | 446 | 7.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.508 |
| SRR1783600 | control | 13.582 |
| SRR1783602 | moderate drought stress | 11.551 |
| SRR1811619 | moderate drought stress | 11.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.499 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.553 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.130 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.151 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.015 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.412 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.967 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 90.953 |
| SRR2868004 | Drought Stress (root) | 43.568 |
| SRR2967015 | Control (root) | 43.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.597 |
| SRR9715740 | Leaf | 2.800 |
| SRR9715741 | Leaf | 10.847 |
| SRR9715739 | Root | 53.768 |
| SRR9715742 | Root | 20.199 |
| SRR9715743 | Root | 23.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 60.066 |
| SRR8749028 | MeJA induced 9h | 20.410 |
| SRR8749029 | MeJA induced 9h | 18.731 |
| SRR8749030 | Uninduced | 1.654 |
| SRR8749031 | Uninduced | 0.328 |
| SRR8749032 | Uninduced | 2.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 73.124 |
| SRR8400027 | Control - Root | 57.954 |