Gene detail information of Glyur000720s00020699.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01680.1 | 2.00E-73 | myb domain protein 55 |
| NR | XP_007145085.1 | 0 | hypothetical protein PHAVU_007G208400g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LPH6|MYB86_ARATH | 4.00E-80 | Transcription factor MYB86 |
| trEMBL | tr|V7BGR1|V7BGR1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW17079.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00720 | 95562 | 97627 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000720s00020699.1 | PF00249.26 | Myb_DNA-binding | 14 | 62 | 9.80E-15 |
| Glyur000720s00020699.1 | PF00249.26 | Myb_DNA-binding | 68 | 111 | 2.70E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.313 |
| SRR1783600 | control | 5.340 |
| SRR1783602 | moderate drought stress | 7.272 |
| SRR1811619 | moderate drought stress | 7.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.541 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.171 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.125 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.139 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.747 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.946 |
| SRR2868004 | Drought Stress (root) | 6.027 |
| SRR2967015 | Control (root) | 5.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.627 |
| SRR9715740 | Leaf | 0.474 |
| SRR9715741 | Leaf | 0.377 |
| SRR9715739 | Root | 1.668 |
| SRR9715742 | Root | 4.912 |
| SRR9715743 | Root | 4.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.192 |
| SRR8749028 | MeJA induced 9h | 0.116 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.425 |
| SRR8400027 | Control - Root | 6.808 |