Gene detail

Gene detail information of Glyur000720s00020697.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62060.1	1.00E-131	Pectinacetylesterase family protein
NR	XP_004495849.1	0	PREDICTED: protein notum homolog isoform X1 [Cicer arietinum]
trEMBL	tr\|V7BGU0\|V7BGU0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17077.1}

Sequence

Transcript Sequence

>Glyur000720s00020697.1
AGTTCATAATGAAGATCTTGCTTAGTTTATACGACATCATAGATTAAACCTTAATGTCGTGGTTGTATGGAAAAAAAGAACATCATCATAAAAAAGAGAACACGCAACGAATGACGACAAGGGTCTACTATGTCTGTCTCTGTTCCACGGCTTATTCCTTTAGCCGTTAGATAAGCCTTGTTTCCTCCACAGGAGAAGGGAAGCTAACAATGTTCCTTATTTAAACCAAATCAAGAGTGTGATTAAGCTCAGTAGAGTGNTTGTAGTTGTGGAGAGCGGAGACTGGGGATATTATCAGTGTCACAAACATGACAATGAAGCTGATTTTGGTAGCAGTTGAATTTGCATGCTTAGTTTCTGGGATTATCTCCTCTGGATCTGAGACACTGCCTCTGCTTTCTTTCTTAGACAACGATTCCGTCTCACCGCAACCTCTTATGGTCAACCTCACTCTTATTCAAGGAGCTGATTCTAAAGGAGCTGTCTGTTTGGATGGAACATTGCCTGGTTACCATTTGGACCGTGGATTTGGATCTGGTGCTAATAGTTGGCTTATTCATCTGGAGGGGGGAGGATGGTGTAATACTATCAGAAACTGTGTCTATAGGAAAAATACTCGTCGTGGTTCCTCAAAATACATGGAAAATCAAATACCATTCACGGGAATATTGAGCAATAAAGCTGAAGAAAACCCTGATTTCTTTAACTGGAACAGAGTCAAATTGCGGTACTGTGATGGAGCGTCTTTCAGTGGAGATAGTGAAAATGAGGCTGCGGGGCTTCAATTTCGAGGACAAAAAATATGGCTAGCAGCAATGGAGGAATTAATGTCCATAGGAATGCAGAAAGCTGACCAGGCCCTTCTCTCTGGATGCTCTGCGGGTGGTCTGGCATCCATATTACATTGTGATGAGTTCCAGAGCCTGTTTTCAAAATCTTCCAAAGTGAAATGTTTGAGTGATGCAGGATTTTTTATTGATGCAGTTGATGTATCTGGGGGACGCACACTGAGGAATCTGTTTGGAGGTGTAGTTCAATTACAGGAAGTACAGAAAAATCTGCCAAAGAGTTGTCTCAGCCAACTGGACCCAACTTCGTGCTTCTTTCCTCAGAATATGGTCGAACATGTTGAGACCCCATTGTTTCTACTCAACGCGGCTTATGATGTGTGGCAGGTCCAAGCCAGTTTAGCCCCACCATCAGCTGACCCTCTTGGTAATTGGAATGACTGCAGGTCAAACCATGCAAATTGTAACTCATCTCAAATTCAGTTCCTCCAAGGTGTTTTCAATCTCTACTATTAATTCAGAAATCAAATGCTAAATGATGTGAAAGACTTCTCAAGGTCATCTCAAACTGGACTGTTCATAAATTCTTGTTTTGCTCATTGCCAGTCTGAGAGACAGGAGACATGGTTCGCCGATGACTCTCCCCTTATTGGGGACAAGCCGGTTGCAGTTGCTGTTGGAGACTGGTATTTCGATCGAGAAGTTGTCAAAGCTATTGACTGTGCTTACCCCTGTGACAACAACTGCCATAATCTGGTGTTTAAATGAGTAAAATTTGTTGTTTCTTTATATGATATGATATCTACACTTCCATCCTTGTAATTGCCATTTATGTATTTAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00720	81599	86389	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE13

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000720s00020697.1	PF03283.8	PAE	39	326	3.10E-131

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.870
SRR1783600	control	34.039
SRR1783602	moderate drought stress	13.699
SRR1811619	moderate drought stress	13.816

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	62.716
DRR006520	Root Summer glycyrrhizin high producing strain	61.425
DRR006521	Root Winter glycyrrhizin high producing strain	0.744
DRR006522	Root Winter glycyrrhizin high producing strain	0.774
DRR006523	Root Summer glycyrrhizin low producing strain	25.400
DRR006524	Root Summer glycyrrhizin low producing strain	25.651
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.517
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.296

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	88.951
SRR2868004	Drought Stress (root)	34.294
SRR2967015	Control (root)	49.349

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.336
SRR9715740	Leaf	1.610
SRR9715741	Leaf	3.295
SRR9715739	Root	21.233
SRR9715742	Root	9.668
SRR9715743	Root	11.861

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.800
SRR8749028	MeJA induced 9h	3.548
SRR8749029	MeJA induced 9h	4.771
SRR8749030	Uninduced	0.771
SRR8749031	Uninduced	0.279
SRR8749032	Uninduced	1.791

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	92.418
SRR8400027	Control - Root	122.750