Gene detail information of Glyur000720s00020695.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62040.1 | 3.00E-97 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| NR | XP_004495846.1 | 8.33E-169 | PREDICTED: uncharacterized protein C24B11.05-like isoform X6 [Cicer arietinum] |
| COG | YP_004173930.1 | 4.00E-22 | pyrimidine 5-nucleotidase family protein [Anaerolinea thermophila UNI-1] |
| trEMBL | tr|C6TKD8|C6TKD8_SOYBN | 2.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G27980.10} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00720 | 65421 | 69047 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K18551 | SDT1 | EC:3.1.3.- | Nicotinate and nicotinamide metabolism | map00760 |
| Nicotinate and nicotinamide metabolism | map00760 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000720s00020695.1 | PF13419.1 | HAD_2 | 14 | 145 | 1.60E-08 |
| Glyur000720s00020695.1 | PF13419.1 | HAD_2 | 188 | 232 | 2.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.111 |
| SRR1783600 | control | 5.562 |
| SRR1783602 | moderate drought stress | 3.915 |
| SRR1811619 | moderate drought stress | 3.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.646 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.233 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 163.436 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 154.980 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.823 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.245 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 42.712 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 47.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.169 |
| SRR2868004 | Drought Stress (root) | 24.583 |
| SRR2967015 | Control (root) | 21.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.016 |
| SRR9715740 | Leaf | 45.042 |
| SRR9715741 | Leaf | 39.675 |
| SRR9715739 | Root | 1.800 |
| SRR9715742 | Root | 7.352 |
| SRR9715743 | Root | 6.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.444 |
| SRR8749028 | MeJA induced 9h | 1.336 |
| SRR8749029 | MeJA induced 9h | 3.334 |
| SRR8749030 | Uninduced | 2.404 |
| SRR8749031 | Uninduced | 4.002 |
| SRR8749032 | Uninduced | 2.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.895 |
| SRR8400027 | Control - Root | 5.929 |