Gene detail information of Glyur000720s00020694 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62030.3 | 6.00E-41 | rotamase CYP 4 |
| NR | AFK38232.1 | 2.06E-60 | unknown [Lotus japonicus] |
| COG | YP_005366669.1 | 5.00E-32 | peptidyl-prolyl cis-trans isomerase [Corallococcus coralloides DSM 2259] |
| Swissprot | tr|Q41651|CYPB_VICFA | 5.00E-59 | Peptidyl-prolyl cis-trans isomerase, chloroplastic (Precursor) |
| trEMBL | tr|I3SD90|I3SD90_LOTJA | 8.00E-61 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00720 | 63092 | 68989 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000720s00020694.1 | PF00160.16 | Pro_isomerase | 26 | 108 | 2.10E-23 |
| Glyur000720s00020694.2 | PF00160.16 | Pro_isomerase | 17 | 133 | 3.60E-35 |
| Glyur000720s00020694.3 | PF00160.16 | Pro_isomerase | 100 | 184 | 7.90E-16 |
| Glyur000720s00020694.4 | PF00160.16 | Pro_isomerase | 100 | 135 | 4.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.812 |
| SRR1783600 | control | 4.225 |
| SRR1783602 | moderate drought stress | 3.040 |
| SRR1811619 | moderate drought stress | 2.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.736 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.406 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.473 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.599 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.056 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.359 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 119.097 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 118.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.302 |
| SRR2868004 | Drought Stress (root) | 8.087 |
| SRR2967015 | Control (root) | 6.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.414 |
| SRR9715740 | Leaf | 78.363 |
| SRR9715741 | Leaf | 55.623 |
| SRR9715739 | Root | 1.007 |
| SRR9715742 | Root | 4.167 |
| SRR9715743 | Root | 3.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.606 |
| SRR8749028 | MeJA induced 9h | 2.145 |
| SRR8749029 | MeJA induced 9h | 1.580 |
| SRR8749030 | Uninduced | 1.352 |
| SRR8749031 | Uninduced | 0.962 |
| SRR8749032 | Uninduced | 0.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.026 |
| SRR8400027 | Control - Root | 6.817 |