Gene detail information of Glyur000720s00020689 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01630.1 | 5.00E-98 | expansin A17 |
| NR | XP_006589086.1 | 5.09E-167 | PREDICTED: putative expansin-A17-like [Glycine max] |
| Swissprot | tr|Q9ZSI1|EXP17_ARATH | 9.00E-141 | Putative expansin-A17 (Precursor) |
| trEMBL | tr|K7N2F3|K7N2F3_SOYBN | 9.00E-167 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G22050.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00720 | 48139 | 49165 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000720s00020689.1 | PF03330.13 | DPBB_1 | 63 | 151 | 1.00E-25 |
| Glyur000720s00020689.1 | PF01357.16 | Pollen_allerg_1 | 163 | 240 | 1.40E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.213 |
| SRR1783600 | control | 0.205 |
| SRR1783602 | moderate drought stress | 0.030 |
| SRR1811619 | moderate drought stress | 0.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.142 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.144 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.077 |
| SRR2868004 | Drought Stress (root) | 33.996 |
| SRR2967015 | Control (root) | 30.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.007 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.091 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.360 |
| SRR8749028 | MeJA induced 9h | 0.238 |
| SRR8749029 | MeJA induced 9h | 1.235 |
| SRR8749030 | Uninduced | 0.736 |
| SRR8749031 | Uninduced | 0.161 |
| SRR8749032 | Uninduced | 0.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.892 |
| SRR8400027 | Control - Root | 2.756 |