Gene detail information of Glyur000720s00020685 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03560.2 | 6.00E-89 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004495833.1 | 1.21E-145 | PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Cicer arietinum] |
| Swissprot | tr|Q9SZL5|PP356_ARATH | 2.00E-38 | Pentatricopeptide repeat-containing protein At4g38150 |
| trEMBL | tr|K7N2F4|K7N2F4_SOYBN | 2.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G22110.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00720 | 13930 | 14880 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000720s00020685.1 | PF01535.15 | PPR | 156 | 180 | 0.0028 |
| Glyur000720s00020685.1 | PF13041.1 | PPR_2 | 183 | 231 | 1.60E-14 |
| Glyur000720s00020685.1 | PF01535.15 | PPR | 258 | 287 | 9.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.595 |
| SRR1783600 | control | 4.982 |
| SRR1783602 | moderate drought stress | 5.424 |
| SRR1811619 | moderate drought stress | 5.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.330 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.555 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.789 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.826 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.554 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.326 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.479 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.311 |
| SRR2868004 | Drought Stress (root) | 2.137 |
| SRR2967015 | Control (root) | 2.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.000 |
| SRR9715740 | Leaf | 3.273 |
| SRR9715741 | Leaf | 1.179 |
| SRR9715739 | Root | 2.371 |
| SRR9715742 | Root | 1.976 |
| SRR9715743 | Root | 2.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.123 |
| SRR8749028 | MeJA induced 9h | 2.640 |
| SRR8749029 | MeJA induced 9h | 3.013 |
| SRR8749030 | Uninduced | 0.294 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.964 |
| SRR8400027 | Control - Root | 2.158 |