Gene detail

Gene detail information of Glyur000720s00020684.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26742.1	0	DEAD box RNA helicase (RH3)
NR	XP_007145071.1	0	hypothetical protein PHAVU_007G207200g [Phaseolus vulgaris]
COG	YP_004056955.1	2.00E-115	ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
Swissprot	tr\|Q8L7S8\|RH3_ARATH	0	DEAD-box ATP-dependent RNA helicase 3, chloroplastic (Precursor)
trEMBL	tr\|V7BHS0\|V7BHS0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17065.1}

Sequence

Transcript Sequence

>Glyur000720s00020684.1
ACTGGGTGTACGGCCTTATCTCCCTGCCGCTTCCTCTCCATTTACCACTTCGACACGAAATGGCTTCTATCGTAGGTGTTTCTTCCATGTACAAAACCCACACTCTGAAACTGCTTAAGAGACCAACGGCCACAACTGCCTCCGTTTCGTTGGACAACGANCCCCGTCTCAACGCCCTTCTCCTAGCCAACCACAACAACAGGCCCAGAATTCGTTTTATTACTTCGGCCATTGCCACCNCCAACTCTTCCGTCCTAACCAAGCAAGAAGAAGCCTTCAAGGGTTTTGGTTCCAACGACGTTAACGGTGACGGCCAATTCGGCTACGACTATGAAGCCGACGATACCCCTGTCACAGTCAGCAATGACGAACTCGACATTTCCAAGCTTGGTTTGCCTTCCCAACTCGTGGCTTCACTCCACAAGCGGGGAATCACCAGCCTCTTCCCCATTCAGAGAGCCGTGTTGCTTCCTGCAATGGAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGGACTGGGAAGACATTAGCATTTGGAATTCCAATTATCAGACGCATCACTGATGATGAACAAACCACTCACAGGCGGTCTGGTCGGCTTCCTAAAGTACTGGTCCTTGCACCTACTAGGGAGTTAGCGAGGCAAGTGGAGAAGGAGATAAAAGAATCCGCACCTTATCTTAACACGGTTTGTGTTTATGGTGGTGTTTCTTATGTGACGCAGCAGAATGCACTCTCACGCGGTGTTGATGTGGTGGTTGGAACACCTGGCAGGATAATCGACCTAATAAACGGGAACAGCCTCAAACTGAGTGAAGTTCAGTATGTGGTCCTTGATGAGGCTGATCAGATGCTTGCCGTTGGGTTTGCGGAGGATGTGGAAGTGATTTTAGAAGAGGTCCCGTCTCAGCGGCAGACCATGCTTTTTTCTGCAACCATGCCTGGTTGGGTGAAGAAATTATCCAGAAAATATTTGAACAATCCATTGACAATTGATTTGGTCGGTGAGCAAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCCATATCAGCCACTGCAACTTCAAAGCGGACAATTCTTTCTGATCTTGTAACCGTCTATGCAAAGGGTGGGAAGACTATTATTTTCACACAGACAAAAAAAGATGCTGATGAAGTATCATTGTCATTAACAAATACTATCGCTTCTGAAGCACTGCACGGTGATATCTCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCTACTGATGTTGCAGCTCGTGGACTAGACATTCCCAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATCCTGAGACTTTTGTACATCGGTCTGGTCGTACTGGACGTGCAGGAAAANAGGGTACTGCTGTCCTGCTGTACACCTCTAGTCAGAGGAGAACTGTTAGATCCCTTGAGCGTGATGTAGGCTGCAAATTTCAATTGGTTGGTCCACCAGCTATGGAAGAGCTTTTGGAATCATCTGCCAAGCAAGTTGTTGCTACACTCAATAGAGTTCATCCTGAGTCTCTTGAATTTTTCACTGCAACTGCACAAAAACTGTTTGAGGAACANGGAGCAAATGTCCTTGCAGCTGCACTAGCACAGCTGAGTGGATTCGCTCGACCTCCATCATCTNGGTCTCTTATCACCCATGAACAGGGATGGATTACCTTACAACTGACTCGAGATTCAGATACTTCTACAAGATATCTTTCTGCTAGATCTGTCTCTGGGCTTCTATCTGGTGTTTATCCTCCAGCTGCTGATGAAGTCGGAAAAATATATTTAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCGGAGGACATTGCTAAAGAGTTACTCAATAAGGACTTACCACCTGGAAACACTATTTCCAAGATCACCAAGTTACCTCCTTTGCAAGATGATGGACCTCCAAGTGATTACTATGGGAAGTTTTCTGACAGAGATCAAAGTAACCGAAGAGGATCTTCTAGGGATCGGAGAGGTTTTAGAATCGGATGGGATGGGGGCCAAAACTCTGATGATGAGTTTGGTGATACGCATGGCAGAGGTGGTAGAAGTTATAAATCTGGCAACAGCAGGTCTCGAATGGGAAGAAGCAGAGGNGATGACTGGCTAATTGGAGGAGGAAGATCAAGCAGGTATTCATCATCAAACAGAGGCAGCTATGGAGGGGCCTGTTTTAATTGTGGACAATCGGGGCATCGGGCATCAGATTGCCCCAGAAAATGAGATTTTTTTTTTTTAGTGGGCACATATTTTTAATTAATTTTGGCGCCACCTTGTCCAAGAATTGAGCCGCCACTGGTGATGTTCAAGAATTGTGAAATTTAGTTATCATTTGCATTGCGGCAGTGATATTCGGCGATAACATTAACTGTATGGTGCTGTTTTGTCTACTCAACCGTCGTGTTTATGATCCGCTTGAACCTACATACTTCTNAGAAAAAAAGACAGGAATAGCTAGCTGTGTGTGGAGTAGAAATATAGCAACACACTCTTCCTTACATCCTTGTAAGCAGAATATGTTTCCAATCACTCCTTCGTAAAATGTCATACATGTTGAGTTCTTTATAATTTTCTTTCGAACAAGCTTGTCTAAATTTCCAAATGATATCTAAATTTGTGATTTGTGTTTGGTAATACCTCTCGCCAATAACATTAACAGGAACCAAAGGAAAACGCATAACCAACAAAAACCATATATATAAACCCAAGAAGAGTGAAACAAGTTGCACATACTCCTCCCAAAATTACATGTTCCTAACCATTGAGCCTTTGGCTACTTCCCAAAAAGAATGTTCATGACAGTTCTAAACAGAGGCCCCCTTTTGTTGCTCCAAATCTCCCGAACAGCCTTCTCATCGGGAACAAACCCCTTTGCCTTCATTTGCTCCAGCAACTGCGCAGCCTCATCCAGCTTCTCCTCCCTAACCAACGCCTCAAACACCGCGGTGTAAGTCATAGCATTGGGTCTCCTCCCTTTATCCATCATTTCCAACACATACTTCTTGGCGTCCTTCAAAAACTTAACATCAACAGCAAGTCCCCTAATGAGGACAGCATAGGTGTAAGCATTGGGAGAGACCCCAGATGCAAGCATGCGCATGTAANCCTTGAGAGCCTCCTTGGGTTGACCGGCGTTGACATACGCCTCGAGAATGGCAGTGTGGGCCACCACGTCGGGCATCTGACCCTTGTCTTTGATCTGACCGAAAAGCTCCAATGCCTCGTGGGTCAAACCCTCTTTGGACAAAGCGTCGAACATCTTCACTGCGTGGTTTAACAACCCATCACCGCTCCTCATGTTGTGGAATATCTCCTGCAAGTCCTTTGGGTCCTTGGGATCTTCTATTGCTGGCTTCTTGCTGAAGGGGTCATAAGGGGGTGGAAGCTGCTTCTTATCCTTGTTCGTTTCTTTCTGGGTATTTTCGGTGGGTTTGGTTCTGGCAACATCCTCGTCATCGGAGAGAGAGAAATTGACCTTGGTGTCGATGNTCTTCTTGTTGGTGGAGCTGAAATGCCGTTGAATGGAGTTAACGTTGGGAACTTTGGGAGAATCAGAAGGGTATGTGGAAATGGGTGTGGATGAAAGAGGTAAGGGTGATGTGGGAAATCTACATTGGAGGCGGGTGCGGAAGAAGGATGAAGTGTAAGTGTTAGAGTTGGAGGTGAAGATTAAAGCGCGAGATATTGCTGTAAATATGGTGCCCCTTCTTCCAATCAAAGCCATTGATGGATACTCTATTAATAGCACCGTCGTCGTGACTGAGTGCTCGGTGACCAGTGTCACTGTCAACCAATAGCACAAGAGAGAAAAAAAAAAAAAAAAAGCTTCCTCTCTCGCGTTACGAATGCTTCCAGAAAATTCGAACGGTAGCGCCAAGTAAAATCGCTTTTATGCTCTTGGGCTGGGCGGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00720	8555	15071	+

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

GO:0004386 helicase activity

GO:0005524 ATP binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000720s00020684.1	PF00270.24	DEAD	130	301	1.00E-44
Glyur000720s00020684.1	PF00271.26	Helicase_C	376	446	2.60E-25
Glyur000720s00020684.1	PF08152.7	GUCT	533	634	8.40E-20
Glyur000720s00020684.1	PF00098.18	zf-CCHC	726	741	1.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.483
SRR1783600	control	5.444
SRR1783602	moderate drought stress	5.686
SRR1811619	moderate drought stress	5.656

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.927
DRR006520	Root Summer glycyrrhizin high producing strain	4.923
DRR006521	Root Winter glycyrrhizin high producing strain	2.082
DRR006522	Root Winter glycyrrhizin high producing strain	2.001
DRR006523	Root Summer glycyrrhizin low producing strain	9.128
DRR006524	Root Summer glycyrrhizin low producing strain	9.042
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.390
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.342

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.315
SRR2868004	Drought Stress (root)	2.658
SRR2967015	Control (root)	3.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.839
SRR9715740	Leaf	2.758
SRR9715741	Leaf	3.639
SRR9715739	Root	2.578
SRR9715742	Root	4.099
SRR9715743	Root	3.934

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.212
SRR8749028	MeJA induced 9h	8.081
SRR8749029	MeJA induced 9h	9.017
SRR8749030	Uninduced	1.349
SRR8749031	Uninduced	1.208
SRR8749032	Uninduced	1.160

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.987
SRR8400027	Control - Root	3.649