Gene detail

Gene detail information of Glyur000719s00020102

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21090.1	2.00E-117	ABC-2 type transporter family protein
NR	XP_003608431.1	0	White-brown-complex ABC transporter family [Medicago truncatula]
COG	YP_008149444.1	5.00E-36	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q8RWI9\|AB15G_ARATH	1.00E-158	ABC transporter G family member 15
trEMBL	tr\|G7JCQ3\|G7JCQ3_MEDTR	0	White-brown-complex ABC transporter family protein, putative {ECO:0000313\|EMBL:AES90628.1}

Sequence

Transcript Sequence

>Glyur000719s00020102.1
ATTCTGTTCAGCTTCTCTGATCTTATAGTCGATAATGGCTTCCTTTCTTCCACATGTCCCGAGTGATCGTTATGAAGCTAAACCAAGCTCAAGCTCAATATTCCCGCAATCTGTCCTAGACATTGAATTAGCCACTAGATCACTAGAGATGGAAGCAAGTGATGCTCCAGAGAGGATGAATAGAGCAGGTTCGAATCATCAAACAAAAAAGATGGGAATCTGCTTGACTTGGAAAGATCTATGGGTGACTGCTTCCACCGGAAAGAATGAAAGCATATCAATTCTTCAGGGACTAACTGGTTATGCCAAACCAGGCCAACTCTTGGCCATAATGGGTCCTTCTGGTTGTGGAAAATCTACACTTCTTGATGCTTTAGCAGGGAGATTGGGTTCAAACACAAGACAATCAGGGGAGATCCTGATCAATGGCAACAAACAGACNTTGGCTTATGGAACCTCGGCATATGTCACACAAGATGACACCTTATTGACAACCTTAACGGTTAGAGAAGCAGTGTACTATTCAGCCCAACTCCAATTGCCNGATTCCATGTCCAAGGAAGAGAAGAAAGAGAGAGCTGAGTTCACAATTAGAGAAATGGGTTTGCAAGATGCAGTTAACACAAGAATTGGAGGATGGGGATGTAAAGGCATTAGTGGGGGTCAAAAGAGGCGAGTCAGCATTTGCATTGAGATCCTCACACACCCTAGACTTCTCTTTCTCGATGAACCAACAAGTGGATTGGATAGTGCAGCTTCCTATTATGTCATGAGAAGCATCGCTACCTTAGATCAAAAAGATGGCAATCAGAGGACTATTATTACATCGATCCATCAGCCTAGTTCTGAAATTTTTCAACTTTTCGACAACCTTTGTCTCTTGTCTTCAGGTAGAACAGTTTACTTTGGACCTGCTTCTGCTGCAAGTGAGTTTTTTGCTTCAAATGGTTTTCCTTGTCCTGCGCTCCAAAATCCATCTGATCATTTACTTAAAACTATAAACAAGGATTTTGATCAGAACACTAGCTCGATGGACAAAGAGGAAGGGCATGCAGGCTTCCTTAATCAATGTTTTGTTCTTACGAAAAGGTCATCTGTGAACATGTTTCGCGATCTAGGTTATTATTGGCTACGCCTTGCCATATATATTGCACTAGCTATAAGCTTAGCCACTCTCTTCTGCGGTTTGGATAAAAATTATGACTCAATTCAGGTATTTGAACGAGAAAGACTAAATGGACATTATGGTGTTACTGCTTTTGTCATTGGGAACACCTTTTCAGCTATCCCATACTTGTTATTGGTTTCACTGATTCCTGGAGCTATAGCTTATTACCCTCCTGGTCTTCAGAAAGGATTTGACCACTTTGTATATTTTATTTGTGTTTTATTTACTTGTCTANTATTAGTGGAGAGTCTTATGATGATAGTTGCGAGTATTGTCCCCAACTTTCTAATGGGTATCATAACTGGTGCTGGGATTCAAGGAATTATGATGTTAGGTGGCGGGTACTTTAGATTTTCAAATGATCTTCCNAAGCCATTTTGGAGATACCCTTGGTACTATGTTACTTTCCATAGGTATGCCTATCAGGGATTGTATAAAAATGAGTTTGAAGGGCTAAGATTTGCTAGAAGTGAAGGTGGTAGCAACGACTCACTCAATTACATTAGTGGCGAGGAGATTCTAAGAAATAAATATCATGTCGACAGTTTATCAAAGTGGGTTGATCTGGGAATCTTATTGGGGATGGTTGTCCTATATCGAGTTCTATTTTTGGTTATTATCAAAGCTACTGAGAAGNTAAAGCCTATTGTTCTATCACTCATGTCAGCATCTCCCAGGCGAGCAACACAAATCATGGAGAATCCAAATGCCACTCCTTTACGTGAAGAAGTTATATAATTAAGTGGATTCCATATAGTGTACTGATGAACATGCCTTCAAGAAGATGAAGAGTGATCTCTTACATTTAGCATGTGTTGCATTTTAGTTGGAGTATTATGATGTAATTAAAGCGTAAAAAAAAGACATATAGCAGTATATGTGAGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00719	97011	101140	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000719s00020102.1	PF00005.22	ABC_tran	85	235	2.40E-26
Glyur000719s00020102.1	PF01061.19	ABC2_membrane	393	527	7.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.321
SRR1783600	control	0.349
SRR1783602	moderate drought stress	0.175
SRR1811619	moderate drought stress	0.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.939
DRR006522	Root Winter glycyrrhizin high producing strain	0.907
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.821
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.272

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.231
SRR2868004	Drought Stress (root)	0.275
SRR2967015	Control (root)	0.025

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.135
SRR9715740	Leaf	4.223
SRR9715741	Leaf	3.129
SRR9715739	Root	0.001
SRR9715742	Root	0.485
SRR9715743	Root	0.590

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.367
SRR8400027	Control - Root	0.403