Gene detail

Gene detail information of Glyur000719s00020100

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17840.1	4.00E-171	white-brown complex homolog protein 11
NR	XP_006584974.1	0	PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 41-like [Glycine max]
COG	YP_008149444.1	2.00E-36	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q8RXN0\|AB11G_ARATH	0	ABC transporter G family member 11
trEMBL	tr\|A0A061E145\|A0A061E145_THECC	0	White-brown complex protein 11 {ECO:0000313\|EMBL:EOX98739.1}

Sequence

Transcript Sequence

>Glyur000719s00020100.1
ATGGGAGGTCATGAGGGAGAAAAGGGCAACAACATTACAGTGACATGGGAGAACTTGGAGGCAACTGTCACAGATGGAAAGAATGGGAAACTAATTCTGAATGGACTAACAGGTTATGCCCAGCCAGGGAAGCTTTTGGCTGTAATGGGTCCTTCAGGATGTGGCAAATCCACACTCCTTGATGCTTTAGCAGGAAGACTGAGATCAAACGTAAAGCAATCAGGGAAGATTCTAATCAATGGCCAAAAACATGCACTGGCATATGGAACATCAGGCTATGTAACACAAGATGATGCTATGCTGTCAACTTTAACAGCTGGTGAAACCTTATACTACTCAGCACAGCTCCAATTTCCAGACTCCATGTCAACAGCAGAAAAGAAGAGAAGAGCAGATATCACACTCAGAGAAATGGGCCTGCAAGATGCAATTAACACAAGGGTTGGAGGGTGGGGTTCTAAAGGCCTAATGCAGTTTTTTGCTTCAAATGGTTTTCCTTGCCCAACTCTCCACAACCCTTCTGATCACTACTTAAGGATCATAAACAAAGATTTTGAACAGGATGCCGACGAAGGCTTTGGTAAAGGAGTAACTACTGAAGAAGCAACTGGTATCCTCGTAAATTCTTATAAGACATCTGAAATTAGAAATCAGGAATCGGGTGCGGTAGGGAAGAAGAGGACCCACGCTGCATTTCTCACTCAATGCCTTGTTCTTATAAGAAGATCTTCCGTGCAAATGTATCGTGACATAAGCAATTACTGGTTACGTCTAGTGGTCTTTATTGCAATAGCAATAAGCTTGGGCTCTATCTTCTATCACATCGGCCCAAGTACTGGGTCCATTCAGGGCAGAGGATCGCTGCTTACATTTTTTATTTCAGTTCTGACTTTCATGACACTTGTGGGTGGATTCTCTCCATTGATCGAAGAAATGAAGGTACTTGAAAGAGAGAGATTGAATGGGCACTATGGTGTTACAGCCTTTCTCATTGGCAACATATTCTCTGCAGTTCCTTACATGCTAATGATCTCTCTGATTCCGGGAGCAATAGTCTATTACCTTTCTGGGCTACACAATGGACTCACACACTTTCTCTACTTTGCTTCAGTCCTATTTGCCATAGTAATGTGGGTTGAGAGCCTCATGATGGTTGTTGGGAGTATCTTCCCAAATTTTGTAATGGGTGTCATCATTGCTGGTGGAGTTGAAGGGCTCATGATTTTAACAGGTGGGTTCTATCGACTCCCAAATGAACTTCCAAAACCATTGTGGAAATACCCTTTCTACTATGTTTCTTTCCTCACATATGCTTTCCAAGGATCGTTCAAGAATGAATTTGAAGGCTTAACATTTGTTTTGTATCAAGATGGAGGTGCCAGAGCAGTTAGTGGTAGGGATATTTTGGCTGAGACATGGCATGTGCAAATGGGTCACTCTAAGTGGGTGGATCTTGCTATCATGTTTGGAATGATTCTGTTTTATCGAGTTCTGTTCTTGGCTNTCAATAAGGGCAAGGAGAAGTACTCAAGACGTATTGTTCCTGCCATAAATGACATTGAGGCCACCACACTGGAAATCAAAGATTGTAGAGCAGTACTTAATGAGACTCAAACAGAAAAAGAGGTACAACTGGGTATCAAGTTGACATGGAAGGATGTATGGGTGAATGCTTCCAATGGAAAGAATGGAAGCAGATCCATTCTTCAAGGTTTAACTGGTTATGCCAAACCAGGGCAACTCTTGGCCATTATGGGTCCTTCTGGCTGTGGCAAGTCCACACTACTTGATACTTTAGCAGGGAGATTAGGCTCAAACACAAGGCAAACAGGGGAAATTTTGATCAATGGTCACAAACATGAATTGGCTTATGGAACCTCGGCATATGTCACACAAGATGATACCTTATTGACAACCTTAACGGTTAGAGAAGCAGTGTACTATTCAGCCCAACTCCAATTGCCAGATTCCATGTCCAAGGAAGAGAAGAAAGAGAGAGCTGAGTTNACAATTAGAGAAATGGGTTTGCAAGATGCAGTTAACACAAGAATTGGAGGATGGGGATGTAAAGGCATTAGTGGGGGTCAAAAGAGGCGAGTCAGCATTTGCATTGAGATCCTCACACACCCTAGACTTCTCTTTCTTGATGAACCAACAAGTGGATTGGATAGTGCAGCTTCCTATTATGTCATGAGAAGCATCGCTACCTTAGATNAAAAAGATGGCATTCAAAGGACTATTGTTATGTCAATCCATCAGCCTAGTACTGAAGTTTTTCAACTTTTCCACAACCTTTGTCTCCTATCTTCAGGTAGAACAGTTTACTTTGGACCTGCTTCTGCTGCAAGCGAGTTTTTCGCTTCAAATGGTTTTCCCTGTCCTGCCACCCAAAATCCATCTGATCATTTACTTAAAACTATAAATAAGGATTTTGATAAGGATATTGTGGTGGGCACTAGAACAATACCCACAGAAGAAGTAATTCGTATCCTTGTGAGCTCATATAAATCNTCAGAAAGGAACCAACAAGTTCAAAATGAAGTAGTAGTACTATCTACAATGCACTCCAACTCAATGGACAAGAAGAAAAGGCATGCAGGCTTCCTTAATCAATGCTTAGTTCTTATGAAACGGTCATCCGTGAACATGTTTCGTGATTTGGGTTATTACTGGCTACGCCTTGCCATATATGTTGCATTGGCGATAAGTTTAGGCACTGTTTTCTATGATTTGGGAACAAGTAATGACTCAAGCAGGGATCGAGGCTCACTTCTTTCATTTGTGTCTGGATTCTTGACTTTCATGACCATTGGTGGATTCCCTTCCTTTGTGGAAGACATGAAGGTATTTCAACGAGAAAGACAAAATGGACATTATGGTGTTATTGCATTTGTTATTGGGAACACTTTTTCGTCCATTCCTTACTTGTTATTGGTTACCGTGGTTCCTGGAGCTATAACTTATTACCTATCTGGTCTTCAGAGAGGATGCGAGCACTTTATCTACTTCATTTGTGTTTTATTCTCTAGTCTGATGTTAGTGGAGAGTCTTATGATGATAGTTGCTAGTGTCGTCCCTAACTATCTAATGGGAATCATAACCGGTGCTGGAATTCAAGGGATCATGCTTTTGATTAGTGGGTTCTTTAAATTGCCACGTGATCTTCCTAAGCCAGTTTGGAGATACCCGTTACACTATGTTGCCTTCCATACATATGCCATCCAAGGATTGTTCAAGAATGAGTACGAAGGACTAAGTTTTACTAAAAGTGAAGATTATGGNAAAAACATGCACTATATTAGTGGTGAAGAGGTTCTAAGAGATACTTGGCAAATTGACATGAGTTACTCGAAGTGGGTTGACCTTGCAATCTTGCTAGGGATGATTGTTCTGTATCGAGTTCTGTTTCTCATTATCATCAAGACTACAGAGAAGGTGAAGCCTATTATTGGATCATTGTCATGCATGTCAGTGTCTCCCAAGCAAACAATACAGGTCGTGGAGAACCCTAATGCCACTCCTTTACATGGAGAGATTGTATAATCTTAAATGCATTGTGAAGGTGTAAAATATCAACTTCACACACTTGTGATTTGTGAAGGTGTACAATATTTATAGACCAATGTAGTGTATTAGTTTTTCTTCTTTTGATCA

Protein Sequence

>Glyur000719s00020100.1
MGGHEGEKGNNITVTWENLEATVTDGKNGKLILNGLTGYAQPGKLLAVMGPSGCGKSTLLDALAGRLRSNVKQSGKILINGQKHALAYGTSGYVTQDDAMLSTLTAGETLYYSAQLQFPDSMSTAEKKRRADITLREMGLQDAINTRVGGWGSKGLMQFFASNGFPCPTLHNPSDHYLRIINKDFEQDADEGFGKGVTTEEATGILVNSYKTSEIRNQESGAVGKKRTHAAFLTQCLVLIRRSSVQMYRDISNYWLRLVVFIAIAISLGSIFYHIGPSTGSIQGRGSLLTFFISVLTFMTLVGGFSPLIEEMKVLERERLNGHYGVTAFLIGNIFSAVPYMLMISLIPGAIVYYLSGLHNGLTHFLYFASVLFAIVMWVESLMMVVGSIFPNFVMGVIIAGGVEGLMILTGGFYRLPNELPKPLWKYPFYYVSFLTYAFQGSFKNEFEGLTFVLYQDGGARAVSGRDILAETWHVQMGHSKWVDLAIMFGMILFYRVLFLAXNKGKEKYSRRIVPAINDIEATTLEIKDCRAVLNETQTEKEVQLGIKLTWKDVWVNASNGKNGSRSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGEILINGHKHELAYGTSAYVTQDDTLLTTLTVREAVYYSAQLQLPDSMSKEEKKERAEXTIREMGLQDAVNTRIGGWGCKGISGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYYVMRSIATLDXKDGIQRTIVMSIHQPSTEVFQLFHNLCLLSSGRTVYFGPASAASEFFASNGFPCPATQNPSDHLLKTINKDFDKDIVVGTRTIPTEEVIRILVSSYKSSERNQQVQNEVVVLSTMHSNSMDKKKRHAGFLNQCLVLMKRSSVNMFRDLGYYWLRLAIYVALAISLGTVFYDLGTSNDSSRDRGSLLSFVSGFLTFMTIGGFPSFVEDMKVFQRERQNGHYGVIAFVIGNTFSSIPYLLLVTVVPGAITYYLSGLQRGCEHFIYFICVLFSSLMLVESLMMIVASVVPNYLMGIITGAGIQGIMLLISGFFKLPRDLPKPVWRYPLHYVAFHTYAIQGLFKNEYEGLSFTKSEDYGKNMHYISGEEVLRDTWQIDMSYSKWVDLAILLGMIVLYRVLFLIIIKTTEKVKPIIGSLSCMSVSPKQTIQVVENPNATPLHGEIV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00719	77785	92036	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000719s00020100.1	PF00005.22	ABC_tran	34	148	1.20E-12
Glyur000719s00020100.1	PF01061.19	ABC2_membrane	234	447	3.50E-30
Glyur000719s00020100.1	PF00005.22	ABC_tran	570	720	4.60E-26
Glyur000719s00020100.1	PF01061.19	ABC2_membrane	871	1082	6.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.010
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.015
DRR006522	Root Winter glycyrrhizin high producing strain	0.015
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.034
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.294

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.024
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.006

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.803
SRR9715740	Leaf	10.450
SRR9715741	Leaf	4.662
SRR9715739	Root	0.002
SRR9715742	Root	0.002
SRR9715743	Root	0.014

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.001
SRR8400027	Control - Root	0.004