Gene detail

Gene detail information of Glyur000719s00020097.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60600.2	4.00E-70	UbiA prenyltransferase family protein
NR	XP_003543928.1	1.08E-109	PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Glycine max]
COG	YP_007132869.1	2.00E-41	1,4-dihydroxy-2-naphthoate phytyltransferase [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q0WUA3\|MENA_ARATH	9.00E-85	1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic (Precursor)
trEMBL	tr\|I1LX60\|I1LX60_SOYBN	3.00E-110	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G08010.1}

Sequence

Transcript Sequence

>Glyur000719s00020097.1
ATGAAGAAGAAGAGCTTGTGCCGTTTAGGTTCCAAAAGGTCAACATGTAGTGTGGAAAAAGTCTTCCATAGGAGGAGATATAGAGGACAGTTGCAAGTTGGAAGAAGGCATCAAATTCAATACCTACATGTGCCTTGTGCAGCAAGAGGAGCAGATGATGATGGAGGGGAAATTCAGGAGGATATTTCAATTTCAAAGGAAACTTTGATTTGGAGGGCAATCAAATTGCCCATTTACTCTGTTGCTTTGGTCCCTCTCACTGTAAGTGGTGCAGCAGCTTATTTGCATACAGGCATTTTCTCAGCTAAATGCTATTTTGTTCTGTTGGCTTCTTCAGTTCTTGTTATTACCTGGCTCAACTTAAGCAATGACGTATATGATTTTGACACTGGAGTTGACAAGGACAAAAAGGAATCGGTTGTAAACCTGGTTGGTAGCCGTACAGGAACCTTCGTTGCTGCCTACTTATGCCTTGCTCTTGGCTCTGTTGGGCTGACTTGGACTGCTGTTAATGCAGGAAGCACGCGTTCAATATTGTTGCTTACTTGTGCAATTATCTGTGGCTATATATATCAGTGTCCACCATTTCGGTTAAGCTATCAGGGGCTAGGAGAGCCCTTATGTTTTGCAGCATTTGGTCCTTTTGCTACTTGTGCTTTTTATTTAGTACAGGGCAGTGCAAGGTTATCTCAGTTACCTGATTACAGAGTCATAATATTTCATTTTCCATGGCTTGATTGCTGTTTCTGAATGATTTTGGTAGTGTGATGAACCATTTCCCCTTGAGTGGAACAGTTCTTTCAGCATCAGTTCTTGTTGGCTTCACAACATCTCTTATCCTTTTCTGCAGTCATTTCCATCAGGTGGAAGGAGACAAAGAAGTTGGAAAAATATCACCTTTGGTTAGACTCGGCACTAAAAGAGGCGCAGAGGTAGTGAAAGTGGCAGTCTTGATGCTTTATGCTCTTTTGGTTGCTTTTGGTCTAAGCAAGACACTTCCTCTCACTTGTATTTTCCTTTGTGCATTGACATTGCCGATGGGAAACCTGGTAGTTAGATTTGTCCAANACAATCACAAGGACAAAAACAAGATTTTCATGGCTAAGTACTTCTGTGTGAGGTTGCATGCTTTGTTTGGTGCTGCACTGGCTTTTGGACTGGTACTGGCTAGAATGGTTAATAAAACGTTTACATCAAGGCCATTACTGAGTTGAAGATAGGCTTGTGGTAAAAGGAAATTATATGAAGCGGAGTTTGCTCAAGAGGATCCTGTGTGGTGCAAGAGCAATATGTTTTGGGTCATGAAAACTTCCTCTGCACAGGATTTTGAGACAAGTTTTCATTCTCTTTCCTGCCTTCTGGCTAAACAAGCTTGAAGAAATTGTAGGATTGTGACCAATCTAGAGTGGGGTGCAGCAAGCTTACCATATCAATCAGAACAACTCAGGAGATGGCTTCACTACCTAGGCACCATGCTTTAACTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00719	58639	62048	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02548	menA	EC:2.5.1.74 2.5.1.-	Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004659 prenyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000719s00020097.1	PF01040.13	UbiA	81	227	6.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.166
DRR006520	Root Summer glycyrrhizin high producing strain	0.205
DRR006521	Root Winter glycyrrhizin high producing strain	0.193
DRR006522	Root Winter glycyrrhizin high producing strain	0.189
DRR006523	Root Summer glycyrrhizin low producing strain	0.032
DRR006524	Root Summer glycyrrhizin low producing strain	0.027
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.942
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.995

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.198
SRR2868004	Drought Stress (root)	2.409
SRR2967015	Control (root)	0.425

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.640
SRR9715740	Leaf	62.798
SRR9715741	Leaf	41.727
SRR9715739	Root	0.015
SRR9715742	Root	0.154
SRR9715743	Root	0.174

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.517
SRR8749028	MeJA induced 9h	1.933
SRR8749029	MeJA induced 9h	0.896
SRR8749030	Uninduced	4.864
SRR8749031	Uninduced	1.317
SRR8749032	Uninduced	3.561

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.361
SRR8400027	Control - Root	0.986