Gene detail information of Glyur000719s00020096 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04390.1 | 2.00E-48 | Ribosomal S17 family protein |
| NR | XP_003535803.1 | 8.27E-81 | PREDICTED: 40S ribosomal protein S17-like [Glycine max] |
| COG | YP_004484922.1 | 2.00E-15 | 30S ribosomal protein S17 [Methanotorris igneus Kol 5] |
| Swissprot | tr|P49215|RS17_SOLLC | 3.00E-71 | 40S ribosomal protein S17 |
| trEMBL | tr|I1L9G9|I1L9G9_SOYBN | 3.00E-81 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G08910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00719 | 56912 | 57334 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000719s00020096.1 | PF00833.13 | Ribosomal_S17e | 1 | 119 | 3.30E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 165.813 |
| SRR1783600 | control | 168.053 |
| SRR1783602 | moderate drought stress | 244.025 |
| SRR1811619 | moderate drought stress | 251.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 275.059 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 272.264 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 138.470 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 133.047 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 152.413 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 149.586 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 66.724 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 65.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 204.579 |
| SRR2868004 | Drought Stress (root) | 125.708 |
| SRR2967015 | Control (root) | 114.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 158.820 |
| SRR9715740 | Leaf | 143.166 |
| SRR9715741 | Leaf | 131.978 |
| SRR9715739 | Root | 463.548 |
| SRR9715742 | Root | 324.102 |
| SRR9715743 | Root | 342.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 421.543 |
| SRR8749028 | MeJA induced 9h | 104.966 |
| SRR8749029 | MeJA induced 9h | 210.171 |
| SRR8749030 | Uninduced | 12.457 |
| SRR8749031 | Uninduced | 3.147 |
| SRR8749032 | Uninduced | 20.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 320.484 |
| SRR8400027 | Control - Root | 293.051 |