Gene detail

Gene detail information of Glyur000719s00020093

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64300.1	0	GTP cyclohydrolase II
NR	XP_004504823.1	0	PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Cicer arietinum]
COG	YP_003709448.1	2.00E-176	3,4-dihydroxy-2-butanone 4-phosphate synthase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|P47924\|RIBA1_ARATH	0	GTP cyclohydrolase-2 (Precursor)
trEMBL	tr\|K7L5C2\|K7L5C2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G07501.1}

Sequence

Transcript Sequence

>Glyur000719s00020093.1
CGAGTGACAGTAAGAACTGTCATTTATGACATATTGACATCAGAGGCGTTACAGAGCACATNCATTGATTATAAGAGAGCTCCCTGTTTTCCTTTCATCCAACACTGAACGGTGAACGCAGCACCAACCAAACCCAATCAATTTCGGTGAAACCCTAAGCCCCAAACAATGGCTTCTTCTCTCTACCTCTCCACACCCTCTCTCTCGCGCCCCCGGCCTTGCAAACATTTCAAATTGTTCAATGGATTGCACAGTACGAATTCATCTATCATAAATGTGCATGGCTCAGATTGGGCGTTTGTTCAGCTGAACTCTAAATTCCGCATAAGTCACAATGCTGTTAGTAGAATTAAAGCTGCATTGACCTCTGAAGGAGGAGACCTGAAAAAGGAAGATCTGNTTGGTGTTGAATCTGTTGGAACTGGGGTACAGCCTGATGCAATAGCGTTTGGAACACTGGGAGCAGACACAGCACTAGCAAGCAGTGCTTTTTCTGATGAGAACGATGAGTTTGATTTTGACAGTCCAACAGAAGGATTTGCTTCAATACCAGAGGCCATTGAAGACATTCGGAATGGAAAAATGGTAGTGGTTGTAGACGACGAGGACAGAGAAAATGAAGGAGACTTGATAATGGCAGCACAGTTGGCAACACCTGAGGCTATGGCTTTTATTGTGAAGCATGGAACTGGGATAGTTTGTGTAAGCATGAAAGAGGAAGATCTGGAGAGATTGGAACTTCCTTTGATGGTAAACAGTCGGGATAATGATGAGAAACTTCGTACAGCGTTCACTGTGACAGTGGATGCCAAACATGGTACCACCACAGGGGTGTCAGCTCATGATAGNGCAACAACAGTTTTGGCCCTTGCATCCAAAGATTCAAAGCCAAGTGATTTCAACCGCCCAGGCCATATTTTTCCGCTAAAATACCGGGAAGGTGGTATCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTGGCAGTACTTGCTGGTTTGGATCCTGTGGCAGTTCTGTGTGAGATTGTGGATGATGATGGTTCCATGGCTAGATTACCTAAGCTTCGTCAATTTGCAGAGCGTGAAAATTTGAAAATTGTATCTATTGCTGACTTAATAAGGTATAGAAGGAAGAGAGATAAACTAGTGGAACGTGCCAGTGCTGCACTAATACCAACAATGTGGGGGCCATTTGCAGCTAACTGTTATAGGTCACTTTTGGATGGGATTGAGCATATAGCAATGGTAAAGGGTGACATCGGGGATGGACGCGATGTTCTTGTGAGGGTACACTCAGAGTGTCTCACGGGAGACATATTTGGATCTGCCAGATGTGACTGCGGAAATCAGCTCGCTCTTGCAATGGAACAGATTGAGGCTGCCGGTAGAGGCGTGTTAGTATATCTTCGCGGACATGAAGGAAGGGGCATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAGGACGAGGGAAGGGATACCGTAGAAGCCAATGAGGAGTTGGGATTGCCTGTTGACTCGAGGGAGTATGGAATTGGTGCACAGATATTGAGGGACTTGGGTGTTCGTTCTATGAAGCTGATGACAAACAATCCGGCAAAATATGTTGGGCTCAAAGGTTATGGTTTGACAATCTCTGGTAGGATCCCATTGTTATCACTCNTCACAAAAGAAAACAAGAGATACTTGGAGACCAAACGTGTGAAAATGGGCCATATCTATGGCTTGGAATTTAATGGCAAATTGAACTATAATGACAGTGGAAATGGTCAAGCCACTAGTGTTGATGATTCTAATGCTGCTTCTGGCTTATAAGCCTGCTTTTTTTTCTATTACACAGATTTATGTCNCACACGGCAGAAGAGGAAGGGAAGTGTAGATGGATTATAGAGAGAAAAGAATCATGATTTAATTTTTCTAATTCATTTGCATGTTTTTGTTTTCTTCAGGTAGGCTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00719	42571	47689	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14652	ribBA	EC:4.1.99.12 3.5.4.25	Riboflavin metabolism	map00740

Gene Ontology

biological_process
GO:0009231 riboflavin biosynthetic process

molecular_function

GO:0003935 GTP cyclohydrolase II activity

GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000719s00020093.1	PF00926.14	DHBP_synthase	127	322	8.00E-82
Glyur000719s00020093.1	PF00925.15	GTP_cyclohydro2	329	498	2.70E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.790
SRR1783600	control	7.743
SRR1783602	moderate drought stress	6.445
SRR1811619	moderate drought stress	6.568

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.858
DRR006520	Root Summer glycyrrhizin high producing strain	11.847
DRR006521	Root Winter glycyrrhizin high producing strain	5.250
DRR006522	Root Winter glycyrrhizin high producing strain	5.192
DRR006523	Root Summer glycyrrhizin low producing strain	11.063
DRR006524	Root Summer glycyrrhizin low producing strain	10.900
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.282
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.401

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.737
SRR2868004	Drought Stress (root)	12.430
SRR2967015	Control (root)	12.502

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.677
SRR9715740	Leaf	19.714
SRR9715741	Leaf	17.285
SRR9715739	Root	3.658
SRR9715742	Root	14.440
SRR9715743	Root	15.149

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.630
SRR8749028	MeJA induced 9h	14.751
SRR8749029	MeJA induced 9h	17.765
SRR8749030	Uninduced	15.756
SRR8749031	Uninduced	18.109
SRR8749032	Uninduced	13.222

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.179
SRR8400027	Control - Root	18.915