Gene detail

Gene detail information of Glyur000719s00020085.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G64330.1	Phototropic-responsive NPH3 family protein
NR	XP_003608415.1	Root phototropism protein [Medicago truncatula]
Swissprot	tr\|Q9FMF5\|RPT3_ARATH	Root phototropism protein 3
trEMBL	tr\|G7JV64\|G7JV64_MEDTR	Phototropic-responsive NPH3 family protein {ECO:0000313\|EMBL:AES90612.1}

Sequence

Transcript Sequence

>Glyur000719s00020085.1
ATGGAACTGCCTGTCTTGTACTACTACACCTATTGGATGGAGGAAAGCGACAGTTTTGAGATAAGTCCAAGCAAGCACCCCATCATGTGGGAATCAGAGAGCGAGGCAGCAGCAGGGAGAAGGGAATATGGGGGTGGAATTCTCAACTCAAGCAAGCATGGTGTGAAGATAGAAGGGTTTCAGCAAAGAGGCAACTCTTGGTACTATGTTTCAGCTGATATTCCAAGTGATCTTCTAGTCCAAATTGGAGAAGCTAACTTCCACTTGCACAAGTACCCTTTGATATCTAGAAGCGGAAAGCTGAACAGAATCANATATGATTCTCGTGACCCTGACTTGAATAAGATAGCTATGGATGATCTCCCTGGAGGGCCTGAGGCTTTTGAGCTTGCAGCCAAGTTCTGCTATGGAATTGCCATTGATTTAACAGCAAGCAACATCTCTGGCCTAAGATGTGCCGCGGAGTACCTTGAAATGACGGAGGACCTAGAAGAAGGCAACCTTATATTCAAGACTGAAGCTTTTCTCAGCTATGTTGTTTTGTCCTCATGGAGAGACTCCATAGTAGTGTTGAAAAGCTGTGAGAAGCTGTCACCATGGGCAGAAAACCTTCAAATCGTCCGAAGATGCAGCGAGTCNATAGCTTGGAAGGCTTGCGCTAATCCAAAAGGAATAAGGTGGGCTTACACTGGAAGAGCACCAAAAGTTTCCAGCCCAAAATGGAATGACATGAAGGATTCAAGCCCTGGTAGGAATAACCAGCTGGTTCCTCCAGATTGGTGGTTTGAGGATGTTTCATTCCTTAGGATCGATCATTTTGTTAGAGTCATTACTGCCATTAAGGTAAAAGGTATGAGATTTGAACTGATTGGTGCTGGAATAATGCATTATGCTACTAAGTGGCTACCAGGATTGGCAAATGAAACAGCAATCCCAGGAGAGGAAGCAAGCAACAACAGCAGTAACAGTAGTTCTAGCAGTGGCGGCAGCGGCAGTATCTGGAAAGGTGGACTTCATATGATTGTTGCTGGGACTAGAGATGACACTTCAAATCTCCAAGCTAATAAGGATCAAAGGATGATTATTGAGAGCCTCATCAGCATAATTCCACCACAGAAGGACAGTGTCACATGCAGCTTCCTGCTTAGGCTTTTGAGAATGGCAAACATGTTGAAGGTTGCACCTGCATTGATTACTGACTTAGAGAAAAGGGTGGGGATGCAGTTTGAGCAAGCTACACTGGCTGATCTTCTAATCCCTTGTTACAATAAAAGTGAGACTGTCTATGATGTGGATCTTGTTCAGAGGCTGTTGGAGCATTTTCTTGTTCAAGAGCAGACTGAAGGTTCCAGTCCAAGCAGACAATCCTCTTTTTCTGACAAGCATGTGGGGTTGGGGAGTAATCTAAATGCCAAGGCAAGAGTGGCAAGGCTTGTGGACAGTTATCTTACAGAGGTATCCAGAGATAGAAACCTTTCCTTGACTAAGTTTCAGGTTCTTGCAGAAGCTTTGCCTGAGTCAGCTAGAACTTCTGATGATGGACTCTACAGAGCAATTGATTCCTATCTTAAGGCACATCCAACACTAACTGAGCATGAAAGGAAGCGGCTTTGCCGTGTAATGGATTGTCAGCAACTCTCCATTGATGCCTGCCTGCATGCTGCCCAAAATGAGAGGCTTCCATTAAGGGTAGTGGTGCAAGTTCTATTCTCTGAACAGGTAAAGATAAGCAATGCACTAGCCAACAGTTCTCTGAAAGAAAGTGTTGAATCTCAGTACCATCCAATGGTAACAAACCGGAAAACACTTCTAGAAGGGACACCACAATCATTCCAAGAAGGATGGGCAGCAGCTAAGAAAGACATAAACACACTAAAGTTTGAGCTTGAGAGTGTGAAGACCAAGTACTTGGAGCTTCAAAATGATATGGAAAACCTGCAGAGACAATTTGATAAGATGCTGAAGCAGAAGCACTCATCAGCTTGGACCAGTGGGTGGAAGAAACTGAGCAAACTTACAAAGATGACAAATGTGGAAAATCATGATATTGCACCTCAGATTCCAACTTCTGAAGAACAGAACAGAAAGACAACCAGAAGGTGGAGAAACTCAATATCCTGAGAGAGAACAAATTATCAATTTCCTAGGAACTGATTGGTACCTCTCAAATTAATTTCTGTGTTCCAGACCTTTTGTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00719	14399	18004	-

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000719s00020085.1	PF03000.9	NPH3	259	551	1.40E-95

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.478
SRR1783600	control	8.471
SRR1783602	moderate drought stress	11.628
SRR1811619	moderate drought stress	11.609

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.077
DRR006520	Root Summer glycyrrhizin high producing strain	13.896
DRR006521	Root Winter glycyrrhizin high producing strain	2.407
DRR006522	Root Winter glycyrrhizin high producing strain	2.401
DRR006523	Root Summer glycyrrhizin low producing strain	20.233
DRR006524	Root Summer glycyrrhizin low producing strain	19.736
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.392
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.467

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.537
SRR2868004	Drought Stress (root)	23.364
SRR2967015	Control (root)	30.062

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.407
SRR9715740	Leaf	4.904
SRR9715741	Leaf	7.083
SRR9715739	Root	2.097
SRR9715742	Root	12.651
SRR9715743	Root	9.722

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.815
SRR8749028	MeJA induced 9h	0.122
SRR8749029	MeJA induced 9h	0.652
SRR8749030	Uninduced	0.123
SRR8749031	Uninduced	0.097
SRR8749032	Uninduced	0.020

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.492
SRR8400027	Control - Root	22.287