Gene detail information of Glyur000718s00020289 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55170.1 | 1.00E-65 | |
| NR | XP_004486819.1 | 1.41E-179 | PREDICTED: DNA double-strand break repair Rad50 ATPase-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9C717|FLXL3_ARATH | 3.00E-82 | Protein FLX-like 3 |
| trEMBL | tr|G7ZWG9|G7ZWG9_MEDTR | 9.00E-178 | Myosin-like protein {ECO:0000313|EMBL:AES67871.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00718 | 114616 | 121252 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.182 |
| SRR1783600 | control | 12.640 |
| SRR1783602 | moderate drought stress | 16.882 |
| SRR1811619 | moderate drought stress | 16.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.101 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.138 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 52.148 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 52.613 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.330 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.796 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.068 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.229 |
| SRR2868004 | Drought Stress (root) | 15.404 |
| SRR2967015 | Control (root) | 21.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.633 |
| SRR9715740 | Leaf | 13.488 |
| SRR9715741 | Leaf | 14.758 |
| SRR9715739 | Root | 17.943 |
| SRR9715742 | Root | 16.887 |
| SRR9715743 | Root | 15.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.002 |
| SRR8749028 | MeJA induced 9h | 17.151 |
| SRR8749029 | MeJA induced 9h | 13.744 |
| SRR8749030 | Uninduced | 9.499 |
| SRR8749031 | Uninduced | 9.634 |
| SRR8749032 | Uninduced | 9.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.260 |
| SRR8400027 | Control - Root | 18.371 |