Gene detail

Gene detail information of Glyur000718s00020287.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13730.1	1.00E-143	cytochrome P450, family 90, subfamily D, polypeptide 1
NR	XP_003531621.1	0	PREDICTED: 3-epi-6-deoxocathasterone 23-monooxygenase isoform X1 [Glycine max]
COG	YP_007055574.1	2.00E-40	cytochrome P450 [Rivularia sp. PCC 7116]
Swissprot	tr\|Q94IA6\|C90D1_ARATH	3.00E-178	3-epi-6-deoxocathasterone 23-monooxygenase
trEMBL	tr\|V7APG7\|V7APG7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW07552.1}

Sequence

Transcript Sequence

>Glyur000718s00020287.1
ATGGACAACAACGTTTGGATTCTGTTTGTGACAGCATTTCTCTTGTCCACTGTGATCCTTATTCTGTACAGGAACAGAAGGATTGGACTCAAAACGAANCACATGACAAATAAACTTCCATTAGGCACTTTTGGATGGCCTTTTATCGGTGAAACCATTGAGTTTGTTTCTTGTGCTTACTCTGATCGCCCTGAGAGCTTCATGGACAAGAGACGCCTCATGTATGGCAAGGTGTTTAAGTCNCACATATTTGGAAGTCCTTCTATTGTTTCCACGGATGCGGATGTTAATAAGTTCATTCTGCAAAGTGATGCAAAGTTTTTTGTTCCTTCTTATCCAAAGTCTCTGACCGAGTTGATGGGGAAGTCTTCTATTTTGCTCATCAATGGAAGCCTACAGAGGAAAATACATGGACTCATCGGTGCCTTTTTCAAGTCTCAACAGCTTAAGGCTCAGATCACCAGAGACATGCAGAAGTATGTGCAAGAATCAATGGCTAATTGGAGGGAGGACCAACCCGTATACATGCAGGATGAAACCAAAAATGTTAGTTCTGTTCTGTTTCCTTCTCTTCTCTCTGTCTCTGAAGTGGCATTGATTAGTTTGGATCCAGGTGAAGAAATGGAGCATCTGAAGAAACATTTTCAGGAATTCATCTCTGGCCTCATGTCTNTACCCATTAACCTCCCAGGAACTAAACTTCACCAATCTTTACAGGCAAGTCCATTAAGAACTATTCAAACAAGAAGAAATAGTGGCATGTCCAAAGTTCCAAAAGATGTAGTGGATGTGCTTCTGAATGATGCAAGTGAACAATTAACGGATGATTTAATAGCAGATAACATGATCGATATGATGATTCCAGGAGAGGACTCNGTGCCTGTTCTTATGACTCTAGCTATAAAATATCTATCAGAATGTCCTGCTGCTTTGCAACAATTGACGGAGGAAAATGTGAAGCTTAAGAAACTCAAAGATCAGCTTGGGGAGCCCTTGTGTTGGAGTGATTACTTATCATTGTCATTTACTCAAACAGTTATCACGGAAACTTTGAGGATGGGAAATATAATAATTGGTGTTATGAGAAAGGCCATGAAAGATGTTGAAATAAAAGGGTATTTGATACCAAAGGGATGGTGTATTTTTGTATATTTTAGATCAGTTCATCTAGATGACCAAAACTATGACTGTCCTTACCAATTCAATCCTTGGAGGTGGCAAAATGAAAAGGAGGATGCCAATCTTCGTGAGGAGAGTGGAATATTGAGCTTCCTTTGGCTACAAAAAGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00718	107372	111761	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP90D1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12638	CYP90D1	EC:1.14.13.112	Brassinosteroid biosynthesis	map00905

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000718s00020287.1	PF00067.17	p450	42	413	4.50E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.157
SRR1783600	control	0.043
SRR1783602	moderate drought stress	0.207
SRR1811619	moderate drought stress	0.230

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.226
DRR006520	Root Summer glycyrrhizin high producing strain	0.154
DRR006521	Root Winter glycyrrhizin high producing strain	0.085
DRR006522	Root Winter glycyrrhizin high producing strain	0.083
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.214
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.498
SRR2868004	Drought Stress (root)	4.994
SRR2967015	Control (root)	4.994

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.327
SRR9715740	Leaf	0.049
SRR9715741	Leaf	0.042
SRR9715739	Root	0.000
SRR9715742	Root	2.208
SRR9715743	Root	1.888

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.475
SRR8749028	MeJA induced 9h	1.788
SRR8749029	MeJA induced 9h	3.047
SRR8749030	Uninduced	0.098
SRR8749031	Uninduced	0.054
SRR8749032	Uninduced	0.073

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.422
SRR8400027	Control - Root	2.336