Gene detail information of Glyur000718s00020282 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55140.1 | 2.00E-57 | Ribonuclease III family protein |
| NR | XP_007150530.1 | 9.84E-117 | hypothetical protein PHAVU_005G160100g [Phaseolus vulgaris] |
| COG | YP_007129264.1 | 8.00E-25 | ribonuclease III [Gloeocapsa sp. PCC 7428] |
| trEMBL | tr|V7BX54|V7BX54_PHAVU | 4.00E-117 | Uncharacterized protein {ECO:0000313|EMBL:ESW22524.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00718 | 90580 | 94327 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000718s00020282.1 | PF00636.21 | Ribonuclease_3 | 117 | 215 | 8.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.593 |
| SRR1783600 | control | 23.972 |
| SRR1783602 | moderate drought stress | 14.494 |
| SRR1811619 | moderate drought stress | 13.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.382 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.767 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.301 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.863 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.650 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.909 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.519 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.153 |
| SRR2868004 | Drought Stress (root) | 6.945 |
| SRR2967015 | Control (root) | 12.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.060 |
| SRR9715740 | Leaf | 11.912 |
| SRR9715741 | Leaf | 6.090 |
| SRR9715739 | Root | 4.155 |
| SRR9715742 | Root | 6.644 |
| SRR9715743 | Root | 3.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.261 |
| SRR8749028 | MeJA induced 9h | 12.448 |
| SRR8749029 | MeJA induced 9h | 9.796 |
| SRR8749030 | Uninduced | 3.423 |
| SRR8749031 | Uninduced | 2.222 |
| SRR8749032 | Uninduced | 1.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.602 |
| SRR8400027 | Control - Root | 27.685 |