Gene detail information of Glyur000718s00020280.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13750.1 | 0 | beta galactosidase 1 |
| NR | XP_004486826.1 | 0 | PREDICTED: beta-galactosidase 1-like [Cicer arietinum] |
| COG | YP_003380010.1 | 3.00E-46 | beta-galactosidase [Kribbella flavida DSM 17836] |
| Swissprot | tr|Q9SCW1|BGAL1_ARATH | 0 | Beta-galactosidase 1 (Precursor) |
| trEMBL | tr|A2Q448|A2Q448_MEDTR | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00718 | 50067 | 57118 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000718s00020280.2 | PF01301.14 | Glyco_hydro_35 | 41 | 340 | 3.20E-113 |
| Glyur000718s00020280.2 | PF02140.13 | Gal_Lectin | 760 | 837 | 5.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.863 |
| SRR1783600 | control | 26.052 |
| SRR1783602 | moderate drought stress | 31.443 |
| SRR1811619 | moderate drought stress | 31.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.698 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.731 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.173 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.159 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.520 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.598 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.111 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.868 |
| SRR2868004 | Drought Stress (root) | 80.198 |
| SRR2967015 | Control (root) | 223.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.100 |
| SRR9715740 | Leaf | 34.681 |
| SRR9715741 | Leaf | 11.218 |
| SRR9715739 | Root | 15.157 |
| SRR9715742 | Root | 26.627 |
| SRR9715743 | Root | 23.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.356 |
| SRR8749028 | MeJA induced 9h | 6.959 |
| SRR8749029 | MeJA induced 9h | 1.789 |
| SRR8749030 | Uninduced | 5.475 |
| SRR8749031 | Uninduced | 0.108 |
| SRR8749032 | Uninduced | 0.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.784 |
| SRR8400027 | Control - Root | 36.338 |