Gene detail

Gene detail information of Glyur000718s00020277

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G72960.1	Root hair defective 3 GTP-binding protein (RHD3)
NR	XP_003529864.1	PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max]
Swissprot	tr\|Q9SSN0\|RHD31_ARATH	Protein ROOT HAIR DEFECTIVE 3 homolog 1 {ECO:0000255\|HAMAP-Rule:MF_03109}
trEMBL	tr\|I1KGC2\|I1KGC2_SOYBN	Protein ROOT HAIR DEFECTIVE 3 homolog {ECO:0000256\|HAMAP-Rule:MF_03109}

Sequence

Transcript Sequence

>Glyur000718s00020277.1
AGAAGGCTTCAAAAGACTATTACCTCATAAAAACAAAAGCGAAATGGCAATGAGCTTGTNAGATGAGAGATCGATTCCCTTAACCATTTTGTGTTTCAAATTCAATCGCGATCTATTTGTTGTTCAACTCNACCCCCACGCAAATGGAGAAAAGTGAGAGTTGTTGTTCCACTCAGCTTATTGATGGAGATGGCGGATTCAATGTTTCCGGGATTGAAAACTTCATGAAAGAGGTTAAATTAACCGAATGTGGGCTTTCCTACGCCATAGTTTCTATTATGGGTCCACAAAGTAGTGGCAAGAGCACGCTATTGAATAATTTGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTATTGGCATAGAGCCTTGTACACTGGTGATGGATTTGGAGGGTACAGATGGAAGGGAACGTGGAGAGGTCGATGATACTGCATTTGAAAAGCAGAGTGCTCTATTTGCTTTGGCTGTTTCTGATATAGTGCTAATAAACATGTGGTGTCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCGCTTTTAAAAACTGTTTTTGAGGTCATGATGAGATTATTTAGTCCTCGCAAAACAACACTGCTGTTTGTCATACGGGATAAAACAAAGACACCACTTGAAAATTTAGAGCCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCAAAACCACAGGCCCATACAGAAACCCCACTAAGTGAGTTTTTCAATGTTGAAGTTGTTGCTCTTTCTAGTTATGAAGAAAAGGAAGATCAATTTAAGGAGCAGGTTGCCAGCTTAAGGCAACGATTCTATCATTCTATTGCTCCTGGTGGGCTTGCGGGGGATCGACGTGGAGTAGTTCCTGGTTCAGGATTTTCATTTAGTGCTCAGCATATCTGGAAAGTCATTAAGGAGAACAAGGATCTTGACCTTCCTGCACACAAGGTCATGGTTGCTACTGTACGTTGTGAAGAAATTGCCAATGAAAAATATGCCCTTTTTGCTGCAAATGAGGACTGGTGTCAGTTGCAAGAGGCTGTGCAATCTGGCCCTGTTTCTGGATTTGGAAAAAGGATCAATTCACTCCTTAATACTTGTCTTTCAGAGTATGATGTTGAAGCCACTTATTTTGATGAAGGTGTGAGATCAGCAAAACAAAAACAGCTTCAAGAAAAAATGTTACAACTTGTCCAACCAGCATTCCAAATTGCACTGGGACAGATAAGGTCTGNAACTTTGGATAAGTTCAAGGAGGCATTTGACAAGGCTTTGGATCGAGGGGAAGATTTTTCTGCTGCTGCTAATAATTGCATAGGGTCTTATATGGATCAGTTTGATGAAGGATGTGCAGATGTTGTCATTGAAATAGCAAACTGGGATACATCTAAAGTAAGGGAGAAACTGCAGCGTGATATTGATGCACATGTTGCATCTGTACGTGCAGCTAAGATGTCAGAACTTACTTCATCATATGAGGAAAAACTGAAGGAGGCCCTGTCTGGACCCGTTGACACTCTTTTGGATGGAGCTAATAGTGATACTTGGCCATCAATAAGGAAACTTCTTACTCATGAGACTAAATCAGCCATTTCTGGGTTCTCTGCTGCACTNACCAGATTTGATATGGATGAACAAACAAGAAAGGACATGATTGTTGGTTTAGAGGATTATGCAAAGGGTGTGNTAGAAGCAAAGGCTAGGGAAGAAGCTGGCAGGGTTCTAATTCGTATGAAGGACAGGTTTATGGCAGTCTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGAAGAGAAGATATTCGAGCCATCACAAAGACTGCCCGTTCTGCATCCTTGAAGTTGCTATCTCTATTGGCTGTACTTCGTTTGGATGACGATGATGATATTGATAATATTGAGAAAACATTGACAGTTGCATTGATGGATTCATCAAGCAGTTCTGTTAAAAATAAGAGCATCATGAAAGTTGATCCACTGGCTTCAAGCACATGGGAACAGGTACCATCCTCAAAAACATTGATCACACCTATCCAGTGCAAATCTTTGTGGAGGCAATTCAAGATGGAGACAGANTATAGTGAGGCCAACAACCGTAATAANAACTGGTTACCTCCACCATGGGCGATTGTTGCTTTGATTATTCTGGGATTTAATGAATTTATGACACTTTTAAGAAACCCCTTGTATTTGGGTGTCATCTTTGTTGGTTATCTTCTCATTAAAGCCCTATGGGCACAGCTTGACATTTCGGGTGAATTTCGCCATGGAGCTCTTCCGGGAATCATATCTTTGTCTACCAAGTTCATTCCAACTATCATGAACCTTGTCAGAAAACTAGCAGAGGAGGGACAAGCCCCTGCAACTAACAATCCTCGGAGAAATCCATCAAAAAGCAATCACAATGTTGGTACTGCTATGTCATCTAATGCTTCATCTGGTGTAACATCATTGGACAACGGATCCGAGTATTCCAGCCCGTCAAAATATGAGTAGGTAAAGGAAGTCATCTCATTGAAGAGCAAACTCTTCTCTTCTGTTGGAGTGTCTGCTGCCAGCATGCTCCATGCTGGGTTTTTGCTTCTTCATGAATTATGATCATTTTGTAAGACAATCAAAGGTATTGTTTTTTGTGCAAGTGCCACATACAGGAGGCTGGGTTTTGTTCCGAGGCAGCCCTTGAAATANATTCTCTCTTTTCCAATTTAGGTTCTTCAGTTAGTTGGAGAAGTTAGGTTATTCTGCATATCTTCAATAGTAGTTATTCTGGCCTTGCATTCAATTTTATTCGCAAGAGTTTTGTAAGTGTTCTAAATGTATNTTTTTGAAAATTTATGCGTTGGACTCGTGTGTTTATATTAGATTTTTAAGATTTACCTGAGGCNTCTGGATTTAACCATTTGAGATCATGTTTGCTACCTGCAATGCTAGCAGTTGATTATCATGTAACATTGTGTTGTAGGTAAAGAGGGATTGCTGACTTCTATCAGCCAGTTGTTTGGCTCTGGCAAGTTTTCTTATTGATTAAAATTTCAGGATTCTTTATATTTTGATCATAAATAAATATTGGCAACAAAAAAATGCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00718	24892	34315	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000718s00020277.1	PF05879.7	RHD3	46	760	9.40E-275

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.622
SRR1783600	control	2.597
SRR1783602	moderate drought stress	3.714
SRR1811619	moderate drought stress	3.684

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.361
DRR006520	Root Summer glycyrrhizin high producing strain	5.260
DRR006521	Root Winter glycyrrhizin high producing strain	0.606
DRR006522	Root Winter glycyrrhizin high producing strain	0.624
DRR006523	Root Summer glycyrrhizin low producing strain	5.181
DRR006524	Root Summer glycyrrhizin low producing strain	5.185
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.184
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.191

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.806
SRR2868004	Drought Stress (root)	0.747
SRR2967015	Control (root)	0.809

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.256
SRR9715740	Leaf	0.193
SRR9715741	Leaf	0.021
SRR9715739	Root	0.830
SRR9715742	Root	1.424
SRR9715743	Root	1.940

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.127
SRR8749028	MeJA induced 9h	0.323
SRR8749029	MeJA induced 9h	0.687
SRR8749030	Uninduced	0.173
SRR8749031	Uninduced	0.387
SRR8749032	Uninduced	0.138

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.293
SRR8400027	Control - Root	2.676