Gene detail

Gene detail information of Glyur000718s00020275.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72970.1	0	Glucose-methanol-choline (GMC) oxidoreductase family protein
NR	XP_003597604.1	0	Protein HOTHEAD [Medicago truncatula]
COG	YP_662346.1	5.00E-32	glucose-methanol-choline oxidoreductase [Pseudoalteromonas atlantica T6c]
Swissprot	tr\|Q9S746\|HTH_ARATH	0	Protein HOTHEAD (Precursor)
trEMBL	tr\|G7IUI3\|G7IUI3_MEDTR	0	Glucose-methanol-choline (GMC) oxidoreductase family protein {ECO:0000313\|EMBL:AES67855.1}

Sequence

Transcript Sequence

>Glyur000718s00020275.1
AAGCAGCAGAACTGGAACGGGTATCGGTACCCTTTTATCAAAAAAGCAAGCTCATTCTCACCTTCACCGTCGGTTTCAACCACCAACACCAGTAATGGTTATTATGACTACATAATAGTGGGGGGTGGCACCGCAGGGTGCCCTTTGGCTGCAACCCTGTCTCAGAACTTCAATGTTCTGCTACTGGAAAGAGGAGGAGTGCCTTTCAACAATCCCAATGTTTCATTTCTGGAGAACTTCCACATTACCTTGGCGGACACTTCACCAACTTCGGCTTCCCAGTACTTCATTTCAACAGATGGAGTCTTGAATGCAAGGGCAAGGGTCTTGGGTGGTGGAANTTCCATTAATGCTGGCTTCTACACTAGAGCAAGCTCAAGATTTATAGAGAAGGCGGGGTGGGATGCCATGCTAGTAAATCAGTCATATCCATGGGTTGAGAAGCAGATTGTTCACCGCCCAAAGTTTTCACCTTGGCAGAGAGCAGTGAAGGACAGCCTTCTAGATGTTGGTGTGTCACCTTTTAATGGTTTCACCTATGAACACAAGTATGGAACCAAGGTTGGTGGAACCATTTTTGACAGATTTGGCCGCCGCCACACTTCTGCTGAATTGCTTGCTTCTGGGAACCCTGATAAACTCACCGTTTTGATCTATGCCACTGTCCAAAAGATTGTTTTTGATGCAAGAGGGAAAAGACCAAAAGCTATTGGGGTTATTTTCAAGGATGAAAATGGTAAACAGCATAAGGCAATTCTGGGAAATGATAGGCAGAGTGAAGTGATTGTGTCGAGTGGGGCAATTGGGAGTCCTCAATTGCTATTGCTAAGTGGAATTGGCCCAAAAGAAGAACTTGAGAAGTNGAACATCCCTGTGGTGCTTGACAACCGATTTGTTGGGAAGGGAATGGCTGATAACCCCATGAACACAATCTTCGTTCCTTCTAAGAGACTATTCAAGCAGTCACTCATAGAAACCGTTGGTATTACCAATTTGGGTGTGTACATTGAGGCCAGCTGTGGGTTTGGGCAGTCCAAGGATAGCATTCACTGCCACCATGGTATGTTGTCAGCTGAGATTGGGCAACTGTCCACAATTCCTCCCAAGCAAAGATCAGCAGAAGCTGTTCAAGCATTTGTGAAGAGCAAGAAAGACATTCCAGTTGAAGCATTCAGGGGAGGGTTCATCTTGTCAAAAGTAGCCAATCCTTGGTCAACGGGTGAGTTGANATTGGTCAACACCAATGTGGAGGACAACCCTGCTGTTACCTTCAACTACTTCAGTCACCCTTATGATCTTGAGCGCTGTGTGGAAGGAATCCGCTTGGCAACAAAGATTGTCCAGTCAGAGCACTTCACAAACCTCACTTTGTGTGACAGACAAACCACAGAGAAACTGCTTAACCTCACTGTGAAGGCTAATGTCAACCTCATACCAAAGCATGTCAANGACACAAAGTCACTAGAGCAGTTTTGTAGAGATACTGTGATCACTATTTGGCACTACCATGGTGGGTGCCATGTGGGGAAGGTAATCAACCCTGATTACAAGGTTCTTGGTGTCAACAGACTCCGTGTGTTGGATGGCTCAACATTTACTGAGTCACCAGGAACCAATCCTCAAGCTACTGTGATGATGATGGGCAGGTACATGGGACTGAAGATTTCAAGAGATAGGTTGGGGAAACTTGCTGGTATTTGAGGACGAGCATGTAATGTGATTTTTGAGGGTCATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00718	10102	14918	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15403	ACE, HTH	EC:1.1.-.-	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000718s00020275.1	PF00732.14	GMC_oxred_N	35	307	2.90E-28
Glyur000718s00020275.1	PF05199.8	GMC_oxred_C	403	549	6.50E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.168
SRR1783600	control	0.134
SRR1783602	moderate drought stress	0.185
SRR1811619	moderate drought stress	0.200

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.406
DRR006520	Root Summer glycyrrhizin high producing strain	0.402
DRR006521	Root Winter glycyrrhizin high producing strain	0.542
DRR006522	Root Winter glycyrrhizin high producing strain	0.564
DRR006523	Root Summer glycyrrhizin low producing strain	0.349
DRR006524	Root Summer glycyrrhizin low producing strain	0.346
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.893
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.546

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.355
SRR2868004	Drought Stress (root)	0.348
SRR2967015	Control (root)	0.286

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.348
SRR9715740	Leaf	0.675
SRR9715741	Leaf	1.362
SRR9715739	Root	0.000
SRR9715742	Root	0.376
SRR9715743	Root	1.202

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.251
SRR8749028	MeJA induced 9h	0.033
SRR8749029	MeJA induced 9h	0.086
SRR8749030	Uninduced	0.183
SRR8749031	Uninduced	0.121
SRR8749032	Uninduced	0.095

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.355
SRR8400027	Control - Root	0.840