Gene detail

Gene detail information of Glyur000717s00025335

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38300.1	7.00E-18	myb-like HTH transcriptional regulator family protein
NR	KHN06404.1	9.91E-128	Putative Myb family transcription factor [Glycine soja]
Swissprot	tr\|Q700D9\|MYBF_ARATH	1.00E-15	Putative Myb family transcription factor At1g14600
trEMBL	tr\|K7KQH9\|K7KQH9_SOYBN	3.00E-127	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G29161.1}

Sequence

Transcript Sequence

>Glyur000717s00025335.1
ATGAAGATGTCAGATGGATATGAGATTCACGAGAATGAGAGGAGTGAGGACACCTCAATGGGGTCTTCACAGAAGTGCTCATCCTTTGACTTGAATGAAGAAGCTAGTAGTGAAGAAGAAGATGATGGATATGATGACAACNACAATGACAATGAGGGTGGTGATGATGGATATGATGAGAAAGCAAAGGATGATGATGATGAAGGTACTACTAATTCAACTAATAATAAAACAAGTACTGGTAGTGGGAATGAGAGAAGAAGTGGTGTGAGACAATATGTTAGATCAAAGATGCCACGCCTTCGGTGGACTCCTGAACTTCATCTCTCCTTTGTGCATGCTGTTGAAAGGCTTGGGGGCCAAGAGAGAGCAACACCCAAGTTGATGTACCGAAGCAAGAAACTTGACGAGGCTGGGCAAGTACTGAGTAAAACACACAGATCATCAACCCATGAAGTGCGTCGTATTTCAGCTCATGTAGCCCCCCATCAGTCGTCCATGATTCCTCATCAACATTTCAAGATGGGAAATGGCGGAATTATTCTAGCAACTAATTACAACGACCACAGTAGTAGTTACTTCCACGCTGGTCTCCTGCACCCCTCCAGCTCCTTATCGCATTCACATTCAAAGGCCATCGATTCGAGACCAACAAGCTATATAAGCAGCGAAGTTGTCTCCTCAAGTATAGCCTTACAAATGCAACAAGGAAGACCAATTATAGCTTCAAACCAGATTCAACTAATGGATACTACACTTGCTCCCATGAGACCAAGCCAATTTCTTGAAGACAAAAAGTGGCCTCCGTTAGAGATTATGACCAATATTCATCAGTGGAAGAAAAACTTAAATACCAATATTTCTGGTAGTAATATTGCACAATCTGTTGTACATCAATTTGGTTCCACTCCAGCTGCATCATCTCTAATTAGACCAGCTGAGGTGAATCAAGAGACGTTGCAGAAAGACAAACAATTATGGGTGCCTGATTTGCAACTGAGTTTAAGTCAGACAAATGACCACAACGATGATGATGACCACAAGACCACTGATCGTTGCAGAGAAACCCAAGAAATCAACACGAGACTTTCCCTTTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00717	98409	100997	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.457
SRR1783600	control	6.221
SRR1783602	moderate drought stress	10.190
SRR1811619	moderate drought stress	10.080

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.100
DRR006522	Root Winter glycyrrhizin high producing strain	0.049
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.407
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.285

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.492
SRR2868004	Drought Stress (root)	3.332
SRR2967015	Control (root)	2.660

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.495
SRR9715740	Leaf	0.443
SRR9715741	Leaf	0.684
SRR9715739	Root	0.520
SRR9715742	Root	1.615
SRR9715743	Root	0.764

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.436
SRR8749028	MeJA induced 9h	0.218
SRR8749029	MeJA induced 9h	0.299
SRR8749030	Uninduced	0.637
SRR8749031	Uninduced	0.236
SRR8749032	Uninduced	0.960

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.124
SRR8400027	Control - Root	18.995