Gene detail

Gene detail information of Glyur000717s00025333.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45840.2	3.00E-166	Leucine-rich repeat protein kinase family protein
NR	XP_004504296.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Cicer arietinum]
COG	YP_001192956.1	8.00E-12	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|C0LGU7\|Y5458_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At5g45840 (Precursor)
trEMBL	tr\|G7LJE3\|G7LJE3_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AET04248.1}

Sequence

Transcript Sequence

>Glyur000717s00025333.1
CGTTGTTATGGTTTTGATTTGTCATCAACTTTGTTAATTTTTTTATTGGGTTGAAAAAGCCTATTCATTTTGTTCACTGGTTATCTGGGTGTAATTTTTTTCCCTCTTTCAGCTCTACCCACATTGCTGGGAATCATTTGAGAGGAAGATATTGAGCTTGGTTATGTATTTGTTGAGAAAAGGGTTGTAAGGAAGATATTAAATATGAAAATGAGGGACCCTGATATTATCTTCGGACCCAAGAGCTGCAATTGTTTTTGCTTTCCATTGTAATATACATACAAAGTTTTGCCTAGTTAGTGAATTTCTGCTGCTTCATCCGAATAGGTTGAAGGGTTTCTCTGTACAGAAAAAAACCTGCCAATTTTGTACATATATGATATGACATATCATATAGCTTCCCGCCTATAAAGAGAGATATAAATTGTGTCTCGACCAAAGGGTACCGTTGCCTTCACACTGCAATGGGATGCAAATGGGGCTCGTTTGGGTTATGGCTCAGACTTTATATTGGATTGGTCTCTCTTTGGGAAATTCGACAGTGTTGGTCTCTGAATGATGAAGGATTGGCCTTGTTGGAATTTCGGGTAAGAATAACTTCTGATCCTTATGGTGCTCTGGCAAATTGGAATCCAAATGATTCCAACCCTTGCAAGTGGTTGGGTGTTCATTGTGTTGACGATAAAGTGCAAATGCTGAACCTAAATGGGCTATCATTGGAAGGGACACTAACTCCTCATCTTGGGAAACTTAATCACTTAAAAGCTCTTATATTATGCAAGAACAATTTTTCTGGCACCATTCCCAAAGAACTTGGAGATCTAGACAAGCTGGAGTTATTGGATTTAAGGGAGAATAACTTGACTGGAAGTATCCCAGAAGAAATTGGCAGGATGCTGTTGTTAAAACAATTGTTGGTTTTTGACAATAAAATTGAAGGCATTGATTCTCAGGATCTCGGAGAGATTGGATTGCCCTCTAAATCACTATTTGTTGACAATTATTCATCACCTATGACAAGTTTATTTCATTGCAAGAATAGAAATGTGTGGTATAGAGATATCAAGCAATGGAACAAGGCAGATTCATCAGCTGTTCCAATTAAAGGAGCATTTAAAAAATACCTTATTGACTTGGCACTGCCACTGCTCAAGCTAGGAAAGGCTGCCCCTCACGGTTATGAAAAGAATTACTGTGAAGAAAATATTTCTAGTTCTGATGAGTCAGAGGTTGGCCCGAATGTATCAAATCTAGTCATTTCTGCACGTCGTGAGTTGCTTGATCAGTCCAGTAGTAACCTTGAAGCTGCACCTTTTAGTGGTGGGCCTACTATGCAGATCAGTTCTCTTCCAACTACCCTAAGTAGTGGAGCTTTCCCAGCTGTGCCAGATGCCAACAAAAAACAAAATCAGTCACCTGCACCCCCGCATTCACCTTCTGATTCTCCACATGATAATCAAACAACTCAACCAAATTCAGCTAGTGGTGCTCCAAGAAAATTGTGGAAGTACATCATTATTATCTCAGGTGTAGCTGTCTTGGTCATTGTTATTGTGATCCTGCTTTGCATTTGGCGGAAACGAGCAGCAAAAGTAATAAAGCCGTGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCGTTTGTAACAGGAGTCCCCAAGTTAAATCGAGCAGAGTTGGAGACAGCCTGTGAAGATTTCAGCAATATCATTAATAGTTTTGATGAGTGCACCATATATAAAGGAACACTGTCCAGTGGAGTCGAGATTGCTGTTGATTCTACTATTGTTACTGCTTCCAAGGATTGGTCAAAGAACATGGAGATGGCCTATCGGAAAAAGATTGATACTCTGTCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTACTGTGACGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCAAATGGAAGCTTATTTGAGCATCTGCATGTTAAGGAAGTCGAACATCTTGATTGGAGTGCAAGGATGAGGATTATTATGGGCACGGCTTATTGTCTTCAGTACATGCATCATGATCTGAATCCACCAGTAGCTCATTCCAACCTTAATTCAGTTTCTATATTATTAACAGATGACTTTGCCGCTAAGGTTTCAGAGATCAGTTTTGGCAATAACAGATTACCATCAGCCAACACACCTAAAGATGAATCAAAGAAATCTGAGCTGCCACCCCCAGCCGATCCTGAAACCGATGTCTATAACTTTGGAATGTTGTTGCTTGAAATCATTTCGGCGAAACTACCTTACTCTGAAGAGCAAGGCCACCTTGCCAACTGGGCTGCTGGGTACTTGAATGATAAGGTAAGCATCAGCAATTTGATCGATCCGACGCTACAGTCCTTCAAAGACAATGAGCTTGATGTTATCTGTGAGGTGATCAAGGATTGTTTACAACCTGATACAAGGTTAAGACCAACAATGAAGGACATAACCCCCAGATTGAGGGAAGTGCTTTGTATATCACCTGAGCAAGCAGTCCCNAGACTTTCTCCACTCTGGTGGGCTGAACTGGAGATCTTGTCAGTGGAGACCACTTAAGCTTTATCTGATTATCTTCTGTGTGTTGTAAGTCAAGTCTCTCTCGAACCGATATCAAGCTGGAAGAGCATAGCTTTGTAATATTGCTATATGGTATTTGCTACTCATTCTTTTCTTCTTTTGATTCTATTTGTTCTTTTGTAAGTCCATATGATTAATACCGTAGCTATTCTTGTTACAGTGGAAGAAGTGTTATTTGAAAGTGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00717	83053	89186	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.15.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000717s00025333.1	PF08263.7	LRRNT_2	30	70	3.60E-13
Glyur000717s00025333.1	PF00560.28	LRR_1	122	142	0.1
Glyur000717s00025333.1	PF07714.12	Pkinase_Tyr	423	673	2.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.025
SRR1783600	control	9.129
SRR1783602	moderate drought stress	5.181
SRR1811619	moderate drought stress	5.361

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.270
DRR006520	Root Summer glycyrrhizin high producing strain	6.171
DRR006521	Root Winter glycyrrhizin high producing strain	1.616
DRR006522	Root Winter glycyrrhizin high producing strain	1.557
DRR006523	Root Summer glycyrrhizin low producing strain	5.035
DRR006524	Root Summer glycyrrhizin low producing strain	5.054
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.362
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.389

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.360
SRR2868004	Drought Stress (root)	8.642
SRR2967015	Control (root)	5.990

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.177
SRR9715740	Leaf	0.566
SRR9715741	Leaf	0.963
SRR9715739	Root	1.951
SRR9715742	Root	3.070
SRR9715743	Root	2.618

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.962
SRR8749028	MeJA induced 9h	19.669
SRR8749029	MeJA induced 9h	27.464
SRR8749030	Uninduced	7.052
SRR8749031	Uninduced	13.142
SRR8749032	Uninduced	6.646

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.278
SRR8400027	Control - Root	14.428