Gene detail

Gene detail information of Glyur000717s00025332.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18700.1	0	CBL-interacting protein kinase 12
NR	XP_007159452.1	0	hypothetical protein PHAVU_002G238800g [Phaseolus vulgaris]
COG	YP_007468874.1	9.00E-36	serine/threonine protein kinase [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|Q9SN43\|CIPKC_ARATH	0	CBL-interacting serine/threonine-protein kinase 12
trEMBL	tr\|V7CR81\|V7CR81_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW31446.1}

Sequence

Transcript Sequence

>Glyur000717s00025332.1
ATGGCTGAGGTGGCTCCCAACAAGAAGGGAAACTCCTCCCCCTCCACCTCCACCTCGACCAACAACACCACCAACAAGAAGAAGGAAAACACGAGTGTTCTGTTGGGTCGGTTCGAGTTAGGGAAGCTCCTCGGCCATGGAACCTTCGCGAAGGTCCACCTAGCCCGCAACATCAAAACCAACGAGGTGGTCGCCATNAAGATCATAAGCAAGGAGAAGATCCTCAAGAGTGGCCTAGTCTCCCACATCAAGCGCGAGATCTCAATTCTCCGCCGTGTCCGCCACCCAAACATCGTTCAACTCTTCGAGGTGATGGCCACAAAGACCAAGATCTACTTCGTCATGGAATACATCCGCGGCGGCGAGCTCTTCAACAAGGTCGCAAAGGGAAGGCTAAAGGAAGAAGTAGCTAGGAATTACTTTCAGCAATTGCTCTGTGCCGTTGAGTTCTGTCACGCGAGAGGGGTGTTCCATAGGGACCTCAAGCCAGAGAATTTGTTGCTCGATGAAAGTGGTAACCTTAAAGTTTCCGACTTTGGTCTCAGTGCTGTGTCGGATCAGATTAGGCAAGATGGGTTGTTCCACACGTTTTGTGGGACACCTGCTTATGTTGCCCCTGAGGTTTTATCTAGGAAAGGGTACGATGGTGCAAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTGTTAATGGCTGGTTATTTGCCCTTTCACGACCGCAATGTTATGGCCATGTATAAGAAGATTTACAAGGGTGAGTTTAGGTGTCCAAGGTGGTTCTCCCCTGAACTCACTAGGCTTCTCACTAGGCTCCTTGATACCAATCCCAAAACAAGGATTTCCATTCCTGAGATCATGGAGAATCCCTGGTTCAAGACCGGTTTCAAGCCTATAAAATTCTATGTTGAGGATGATAGAGTTTGTAGTATTGATCATGATATTGATANGGTGCAGCAGCACAACGATGATGATGTGTCATTTTTGGACTTGTTGGTATCAGAATCGGACTCTGAGGCTGAGAGTACTAGAAGGAGGAGGACTAGTGGTGCTTCGTTGCCGAGACCTGCGAGTTTGAATGCATTTGACATCATATCGTTTTCTCAGGGATTTGATCTTTCTGGGTTGTTTGAGGAAAAGGGTGATGAGGCGAGGTTTGTGTCAGGTGCACCTGTGCCTAAGATTATATCAAAATTGGAGGAAATTGCTCAGCTTGTTAGCTTCACAGTGAGGAAGAAGGATTGCAGGGTGAGCTTGGAAGGTTCAAGAGAAGGGGTGAAGGGGCCATTGAGCATTGCNGCTGAGATATTTGAGTTGACCCCTTCTTTGGTGGTTGTGGAGGTGAAGAAAAAAGCAGGGGATAAAGCAGAGTATGATCAGTTCTTTAACTCTGAGTTGAGGCCCGCGTTGCAGAATTTAATGATGGAGGAGGAATCTGCTCNTTCTGCTGCAACTTCTTCGTATCAATCTGAACCTGCTGAACCCTTGCAACAACGTGCACTTTCTGACCCTGCCATTGACATACATTCAGATACTGAATCTCTGAACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00717	77379	78929	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000717s00025332.1	PF00069.20	Pkinase	38	292	9.50E-76
Glyur000717s00025332.1	PF03822.9	NAF	355	412	2.20E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	173.115
SRR1783600	control	174.022
SRR1783602	moderate drought stress	337.470
SRR1811619	moderate drought stress	334.188

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	234.553
DRR006520	Root Summer glycyrrhizin high producing strain	233.542
DRR006521	Root Winter glycyrrhizin high producing strain	137.500
DRR006522	Root Winter glycyrrhizin high producing strain	134.322
DRR006523	Root Summer glycyrrhizin low producing strain	169.315
DRR006524	Root Summer glycyrrhizin low producing strain	167.932
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.077
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.189

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	151.795
SRR2868004	Drought Stress (root)	178.874
SRR2967015	Control (root)	186.955

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	71.095
SRR9715740	Leaf	112.222
SRR9715741	Leaf	100.036
SRR9715739	Root	150.429
SRR9715742	Root	158.539
SRR9715743	Root	150.087

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.131
SRR8749028	MeJA induced 9h	27.169
SRR8749029	MeJA induced 9h	14.170
SRR8749030	Uninduced	10.196
SRR8749031	Uninduced	5.848
SRR8749032	Uninduced	8.883

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	141.611
SRR8400027	Control - Root	125.331