Gene detail information of Glyur000717s00025327 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42610.2 | 5.00E-56 | Protein of unknown function (DUF640) |
| NR | XP_004485894.1 | 1.41E-89 | PREDICTED: uncharacterized protein LOC101502781 [Cicer arietinum] |
| Swissprot | tr|Q9S7R3|LSH10_ARATH | 2.00E-79 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 |
| trEMBL | tr|M5WHX2|M5WHX2_PRUPE | 6.00E-88 | Uncharacterized protein {ECO:0000313|EMBL:EMJ13319.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00717 | 56088 | 59897 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000717s00025327.1 | PF04852.7 | DUF640 | 28 | 157 | 1.50E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 240.046 |
| SRR1783600 | control | 245.543 |
| SRR1783602 | moderate drought stress | 266.131 |
| SRR1811619 | moderate drought stress | 271.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 252.021 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 249.375 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 255.208 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 223.895 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 275.143 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 253.359 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.480 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.379 |
| SRR2868004 | Drought Stress (root) | 18.495 |
| SRR2967015 | Control (root) | 25.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.303 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.036 |
| SRR9715739 | Root | 52.872 |
| SRR9715742 | Root | 110.887 |
| SRR9715743 | Root | 95.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.399 |
| SRR8749028 | MeJA induced 9h | 10.403 |
| SRR8749029 | MeJA induced 9h | 1.423 |
| SRR8749030 | Uninduced | 19.126 |
| SRR8749031 | Uninduced | 0.983 |
| SRR8749032 | Uninduced | 1.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 64.446 |
| SRR8400027 | Control - Root | 68.832 |