Gene detail information of Glyur000717s00025321 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G34140.1 | 4.00E-35 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_007212176.1 | 6.21E-59 | hypothetical protein PRUPE_ppa012605mg [Prunus persica] |
| Swissprot | tr|O22967|CDF4_ARATH | 3.00E-47 | Cyclic dof factor 4 |
| trEMBL | tr|M5X2T0|M5X2T0_PRUPE | 2.00E-59 | Uncharacterized protein {ECO:0000313|EMBL:EMJ13375.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00717 | 17581 | 18075 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000717s00025321.1 | PF02701.10 | zf-Dof | 52 | 107 | 7.10E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.043 |
| SRR1783600 | control | 5.429 |
| SRR1783602 | moderate drought stress | 7.017 |
| SRR1811619 | moderate drought stress | 7.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.688 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.460 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 88.320 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 84.927 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.656 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.960 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.705 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.595 |
| SRR2868004 | Drought Stress (root) | 15.829 |
| SRR2967015 | Control (root) | 17.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.617 |
| SRR9715740 | Leaf | 0.574 |
| SRR9715741 | Leaf | 1.200 |
| SRR9715739 | Root | 7.357 |
| SRR9715742 | Root | 7.436 |
| SRR9715743 | Root | 5.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 70.171 |
| SRR8749028 | MeJA induced 9h | 57.747 |
| SRR8749029 | MeJA induced 9h | 79.498 |
| SRR8749030 | Uninduced | 60.943 |
| SRR8749031 | Uninduced | 59.945 |
| SRR8749032 | Uninduced | 69.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.323 |
| SRR8400027 | Control - Root | 12.844 |