Gene detail

Gene detail information of Glyur000717s00025318

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42590.2	3.00E-121	general regulatory factor 9
NR	XP_003531255.1	0	PREDICTED: 14-3-3-like protein C-like isoform X1 [Glycine max]
Swissprot	tr\|Q96452\|1433C_SOYBN	3.00E-176	14-3-3-like protein C
trEMBL	tr\|T2DNK7\|T2DNK7_PHAVU	1.00E-178	Uncharacterized protein {ECO:0000313\|EMBL:ESW31439.1}

Sequence

Transcript Sequence

>Glyur000717s00025318.1
ATTTGTCTCCCTTCTAGTTTCACTCACGCCACTCTGCCGTGACAAATCACTTCCCAGCCACTTAACCCCAAAAAATGCCAAAAGTCAAAAGCGTGACAACCACTCTCTGATAAGCGCGTGCATAGAGCCGCTCTACACAACCAACCTGTTCCGTCGGGACCTGTCTCATTGTCCCTCCCAAGTCCCAACCTTGAAATGTTCGAAATGCTACTGAGAGAGAGTCAGAGAGAGAGGGGAAGTGAGAGAAAGTGAGAGGAGAGAGAAAGGTTGCAGATCATCCATGGCGTCCACCAAGGAACGTGAAAACTTCGTCTACATCGCCAAGCTCGCCGAACAAGCCGAGCGCTATGAAGAAATGGTGGAAGCGATGAAGAATGTGGCGAAGCTAAATGTTGAGTTGACAGTGGAGGAGCGAAACCTTCTGTCAGTTGGGTACAAGAATGTAGTGGGTGCTCGTAGGGCTTCGTGGAGGATTCTATCCTCGATTGAGCAGAAGGAAGAAGCCAAAGGGAACGATGTGAGTGTGAAGCGGATAAAGGAGTATAGGCAGAAGGTGGAATCCGAGTTGTCCACTATATGCAGTGATATCATGACTGTTATTGATGACCACCTTATCCCTTCATCCTCTGCTGGTGAACCTAATGTCTTTTTCTATAAAATGAAAGGGGACTATTATCGGTATCTGGCGGAATTCAAGAGTGNTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCATATCAGACAGCTTCCACTACAGCAGAAGCTGAGTTACCTCCTACGCATCCCATTCGATTGGGTTTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTCTGAACTCTCCTGAAAGGGCATGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGATACTCTGAGTGAGGAGTCTTATAAAGACAGCACACTAATTATGCAGCTTCTAAGGGACAATCTCACCTTGTGGACTTCTGACATCCCTGAAGATGGAGCTGACGAACAAAAGGCAGAGTCTGCACGAGGTGGTGGAGGTGAAGATGCATAGTGAAGAGAAGCGGATATTATTGGCTAGGAGTTTGTGGTGTGCATACGAGAAGGCTAGTAGTCTCTTGAAACTTTTGATAGTTTTACCATTAGGATGTTGTGTGATAGAGCATGAAACTTTGTCTCTAGAAAATTACCATAGAGATTTGTGACACTTTCATTTTATGCATGCATGTGTTTTCTGCTACTGGAGACTGGACTTGAGATTGCATGGTGTTTGGATGTAATTTAATGCATTGCTTCCTTTTGACTGACATCTTTGCAAAAAGGGTGCTGGCTTGCATTCATTCATCAGTTTACATATATCATTGTTCCAAAATAAACCTTGTGTTAATCATGGATTGATGTGATTTAACATATGTCGTTGGACGTGGAACTGAAAAGGGATTGAGAATTAATGAATAATTTTTTATCATTTATGTAGACATGGTGTGTAACTAGGCATGTTGGTAAGTTGAGAAATAGTTGTTGAGGAATAAGATTTGTACCTCTTTAGGCTATAGTTTAATTATTTGGTTAATTATACTTCACTATACCTTCATAATTTCAGATTTTTTTAAATTGACTACAAATCTTAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00717	8818	12273	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0019904 protein domain specific binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000717s00025318.1	PF00244.15	2014/3/3	7	240	2.00E-115

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.658
SRR1783600	control	30.773
SRR1783602	moderate drought stress	43.410
SRR1811619	moderate drought stress	43.101

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	128.476
DRR006520	Root Summer glycyrrhizin high producing strain	127.097
DRR006521	Root Winter glycyrrhizin high producing strain	109.026
DRR006522	Root Winter glycyrrhizin high producing strain	105.652
DRR006523	Root Summer glycyrrhizin low producing strain	124.620
DRR006524	Root Summer glycyrrhizin low producing strain	127.298
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.511
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.623

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	259.470
SRR2868004	Drought Stress (root)	299.784
SRR2967015	Control (root)	249.288

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	107.524
SRR9715740	Leaf	100.895
SRR9715741	Leaf	135.466
SRR9715739	Root	44.020
SRR9715742	Root	84.206
SRR9715743	Root	81.821

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	223.809
SRR8749028	MeJA induced 9h	164.548
SRR8749029	MeJA induced 9h	163.352
SRR8749030	Uninduced	179.018
SRR8749031	Uninduced	180.482
SRR8749032	Uninduced	167.742

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	195.291
SRR8400027	Control - Root	196.829