Gene detail

Gene detail information of Glyur000716s00026204.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19160.1	3.00E-141	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NR	KHN22671.1	0	hypothetical protein glysoja_027559 [Glycine soja]
trEMBL	tr\|I1MSM7\|I1MSM7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G06790.2}

Sequence

Transcript Sequence

>Glyur000716s00026204.1
GTGTTTGTGTGTGTTTTATAATTGTGCATGGTTTCCTCTGATTCTTCCCTTTGCCCTAGATCTTCTTCCCAGAGATCTTTCCATTCATTATTCCTCAAACTTATCAGATTTTTCTGCATCAATCCATTGGAAATTTCTTGCAGGCTATTTATCTTGATTTCTTGNGTATCTGAGGCATGCTGAATATGCATGAAAAGGAGATTTGTTGGAGGCAAAAACTGTGATTCCTTTACATAAATGAAGACAGCAAAATTTTGGCGTCTTGGCATGGGTGATGTGCAGATCTTGCCTGGGTCNCGCCACCGTTCTCCGATGAAGAAGCCAATGTGGATTATTGTCCTGGTTTCGTTTGTATGCATGTTTCTAATATATGCTTATATCTACCGGCCAAAAAACAGTGCATCTTGTAANGTCTTTTCTTCTAGAGGGTGCAAGGCTATTGCTGATTGGCTTCCACCTGTTCCNGCAAGGGAATACACAGATGATGAGATTGCATCGCATGTGGTTATTAGGGATATTTTAAACACACCACCAGTTCATTCAAAAAATCCAAAAGTTGCCTTCATGTTTTTGTCGCCTGGTTCTCTACCATTTGAAAAATTGTGGGATAAATTTTTCCAAGGCCATGAAGGGAAGTTCTCTGTTTATGTGCATGCATCCAAGACTAAACCAGTTCATGTGAGCCGTTATTTTGTTAATCGGGATATACGCAGTGACCAGGTGGTTTGGGGTAAAATTTCTATGGTTGATGCAGAGAGACGACTACTGGCAAATGCCCTACAAGATCCAGATAACCAGCATTTTGTTTTACTTTCTGATAGCTGTGTGCCACTGTATAATTTTGACTATATTTTTGATTATCTGATGTATACAAATATCAGCTTTGTGGACTGCTTTAGGGATCCTGGTCCTCATGGCAATGGAAGGTATTCAGAACACTTGTTACCTGAAGTTGAGATTAAGGATTTTAGAAAGGGTGCTCAGTGGTTTTCTATGAAGCGGCAGCATGCTGTTATANTTATGGCCGACAACCTGTATTACTCAAAATTTCGGGCTTACTGTCAGCCTGGTTTGGAAGGGAAAAATTGCATTCCAGATGAGCATTACTTACCCACCTTCTTCAAGATTGTCAATCCTGGGGGAATTGCGAACTGGTCATTAACTCATGTTGACTGGTCTGAGAGAAAATGGCATCCNAAATCATATAAGGCTCGGGATGTTACTTACGAGCTTTTGAAGAATATTACGGTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00716	101769	107631	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0008375 acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000716s00026204.1	PF02485.16	Branch	107	336	1.10E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.640
SRR1783600	control	9.498
SRR1783602	moderate drought stress	13.385
SRR1811619	moderate drought stress	13.204

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.061
DRR006520	Root Summer glycyrrhizin high producing strain	11.973
DRR006521	Root Winter glycyrrhizin high producing strain	24.101
DRR006522	Root Winter glycyrrhizin high producing strain	23.589
DRR006523	Root Summer glycyrrhizin low producing strain	15.117
DRR006524	Root Summer glycyrrhizin low producing strain	15.642
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.073
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.903

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.188
SRR2868004	Drought Stress (root)	15.895
SRR2967015	Control (root)	18.478

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.298
SRR9715740	Leaf	10.645
SRR9715741	Leaf	14.244
SRR9715739	Root	6.721
SRR9715742	Root	15.321
SRR9715743	Root	13.279

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.596
SRR8749028	MeJA induced 9h	29.174
SRR8749029	MeJA induced 9h	23.247
SRR8749030	Uninduced	19.445
SRR8749031	Uninduced	23.095
SRR8749032	Uninduced	17.097

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.110
SRR8400027	Control - Root	19.510