Gene detail

Gene detail information of Glyur000716s00026203

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G57250.1	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004487970.1	PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LVD3\|PP434_ARATH	Pentatricopeptide repeat-containing protein At5g57250, mitochondrial (Precursor)
trEMBL	tr\|K7MBT0\|K7MBT0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G17776.2}

Sequence

Transcript Sequence

>Glyur000716s00026203.1
ATGTTGTTCCACCCAAGGCGAAGGCCAAGTCCCTTCTCACTCCAAACCTCTCTCAAACGTGGCCTCACTCCCACACCCAATTCCATCAACCGCTTCCTCCTCTTCCTCTTCCACCACCGCAAGTTCAACCTAATCATCAACCTCTTCAACAACAACAACAACACCAACAATGTGGTCCCCACCACTCCCCGAACCCACTCCATCCTCACATGGGCACTCCTCANATCCCACCGCTTCGAAGAAGCCGAGCGATTCATCAACAGCAACAACAACACCCACACCCCCACGCGCGCGTGGGACGCGCTCATCCGTGGCCTCTGCGTCACGCGTCAAGACCCTGATAAGGCTCTCTCCGTTTTGCGCCACTGCCTCCTTGACCGTGGCGTTTTCCTTTCTTCCTCCGTTTTCTGCTGCGTAATTCACAAGCTTTGTTCTCTGGGTCACGTGGGTAAGGCCATTGAGGTTCTTGATTTGATGTCTGAGAACAGAAACGGGTACCCNTTTGACGATTTCGTTTGTAGCTCTGTGGTTTCCGGGTTTTGCAGGGTTGGAAAACCCGAACTTGCGTTGCGGTTCTTCCATTCCACGCGCTCCAGAGGCGCGTGGAGGCCAAATCTTNTGACTTGCACGGCGCTTGTGGGTGCCCTTTGTAAGCTTGGGAGGGTTGATGAGGTTTGTGGCTTGGTTCGTGGCATGGAGAATGATGGGTTGGGTTTGGATGTTGTTTTGTATAGTGCTTGGGTTTGTGGGTATGTTGAGGAGAAGGTTTTGGTTGAGGTTTTTAGGAAGATGAGGGAAATGGTGGATAAGGGTATAGATCATGATGTTGTTAGTTATACCATACTCATTGATGGGTTTTCTAAGTTAGGTGATGTTGAAAAGTCGTTTACTTTCTTGGCCAAGATGATCAAAGAGGGACATAAACCCAATAAGGTTACTTATACTGCAATAGTGTCTGCATACTGTAAGAAGGGTAGGGTAGAGGAAGCGTTTTCTGTTTTCAAGAGCATGAGGGATATGGGAATTGAACTGGATGAATTTGTGTTTGTGGTTTTGATTGATGGGTTTGGCAGGATGGGAGATTTCGATAGCGTGTTNCGTCTGTTCGATGAAATGGAAAAGAGAGGGATTAGTCCTAGTGTTGTNACATACAATGCTGTTGTAAATGGTTTGTGTAAGTATGGGAGGACGCAGGATGCGGATGAGTTCTCGAAAAATGTGACTGCAGATGTGATTACGTACAGCACGTTGTTGCATGGGTATACCGAAGAAGAGAACGCTGTGGGGATTTTGCAAACGAAGAGGCGACTAGAAGAAGCTGGTATCACTATGGATGTTGTAATGTGTAATGTACTGATCAAAGCNCTGTTTATGATGGGGGCTTTCGAAGATGTTTATGCACTTTACAAGGGAATGCCAGAAATGGATCTGGTTCCAAATTCTGTTACTTACTGCACAATGATCGATGGGTATTGCAAGGTNGGTAGAATTGATGAGGCACTTGAGGTATTTGATGAGTTCAGAAAGACATCGATCTCTTCAAATGCGTGTTACAATAGTATTATCAATGGCCTTTGCAAGACGGGCATGGTAGAAATGGCCATTGAGGCATTGCTTGAACTCAANCACAAAGGTCTCGTGTTGGATGTAGGTACGTATAGGGTGTTAATGAAGACAATTTTCAAAGAAAATGGTTCAAACGGGGTTTTAGATTTTGTTTACAGAATGGAAGGTTTGGGGCCAGACATATATAATGCAGTATGTAATGATTCCATCNTTTTATTATGTAAAAGAGGATTGCTTGAGGATGCAAATCAATTGTGGATGATGATGAAAAAGAAATGCTTATCTGTCACGAGCAAGTCTTATTATTCACTTTTACGAAGGCATCTTAGTAATAGGAATAGGGAGCAAATTCTGCCCCTTCTGAGTAGCTTTCTGAAAGAGTATGGTCTAGTTGAACCAAAGGTGCAAAAGTTAATTGCTCGCTACCTCTGTCTGAAAGATGTTGATAGTGTCCTTCGATTTCTTGGAAAAACAGTGGAGAACTCTTCAGCAGTCACTTTTCCTGTCTCCGTTCTCAAGATTCTCATAAAGGAAGGTAGAGCTTTAGATGCATATAAGCTTGTCGTGNAGGCTCACGATAACTTATCAGTCATGGATGTTGATTATGCCATTGTGATTCGTGGCTTATGCAAGGGAGGATATCTCAATAAAGCATTGGATCTTTGTGTCTTTATTGAAAAGAAGGGGATGAATTCGAACATAGACATATATAATTCAATAATAAATGGATTGTGCCATGAGGGATGTCTTATTGAAGCATTTAGGNTATTTGATTCATTAGAGAACCTTAACTTGATACCCTCTGAAATAACTTATGCTACATTAATTTATGCTCTATGTAGGGGAGGATATTTGTTAGACGCAGAACATGTTTTCAGGAAAATGGTCCTCAAGGGCTTTCAACCAAAAACACAAGTTTACAATTCATTACTTGATGGTATATCTAAGTTTGGTCAATTAGAGAAGGCATTTGATCTTCTAAATGAAATGGAGACAAAACATATTGTGCCTGACAGTTTGACTGTTAGTGCTGTAATAGATTGCTATTGCCGGAAGGGTGACATGGAAGGAGCCCTTGAATTCTATTATAAGTTCAAGTCGAAGGATATATCACCNGATCTTTTGGGGTTCTTGTATTTGATAAGAGGTCTATGTACCAAGGGAAGGATGGAAGAAGCCAGGAGTGTCTTGAGAGAAATGCTCCAGTCNAAGAATGTTGCAGAGATAATTAACNTAGTCAACAGTGAGGTTGATACAGAGTCNATAGGTGATTTTCTTGCCACTCTATGTGAGCAAGGAAGCATTCAAGAAGCTGTTACAGTTCTGAATGAAATTGCACGCATGCTTTTTCCCGTTCATAGGCTGGCTACTTATAATCAAGGATCTCATAAACCGCAGAATATTTATGAATGGAAGGATTTTGGTTCAAAATCTTCAAGCTCTCTACCTTCGTCTTGCAAAGATGGTTTGGATTTTGGATCTTCTGATGCCGGTGGGAATGTAAGGAATCTTATGACGAATAATGGCAGTTATTTGACAAGATCCCAGCTGCACAGCTTTGACTTCTATTATTCTAGCATTGCTGCTCTTTGTGCCAAGGGGGAGCTGCAGGAAGCTAATCAATTAGCAAAAGAAATGCTTTCTGACCTGACAGAGTCTATGAACTGA

Protein Sequence

>Glyur000716s00026203.1
MLFHPRRRPSPFSLQTSLKRGLTPTPNSINRFLLFLFHHRKFNLIINLFNNNNNTNNVVPTTPRTHSILTWALLXSHRFEEAERFINSNNNTHTPTRAWDALIRGLCVTRQDPDKALSVLRHCLLDRGVFLSSSVFCCVIHKLCSLGHVGKAIEVLDLMSENRNGYPFDDFVCSSVVSGFCRVGKPELALRFFHSTRSRGAWRPNLXTCTALVGALCKLGRVDEVCGLVRGMENDGLGLDVVLYSAWVCGYVEEKVLVEVFRKMREMVDKGIDHDVVSYTILIDGFSKLGDVEKSFTFLAKMIKEGHKPNKVTYTAIVSAYCKKGRVEEAFSVFKSMRDMGIELDEFVFVVLIDGFGRMGDFDSVXRLFDEMEKRGISPSVVTYNAVVNGLCKYGRTQDADEFSKNVTADVITYSTLLHGYTEEENAVGILQTKRRLEEAGITMDVVMCNVLIKALFMMGAFEDVYALYKGMPEMDLVPNSVTYCTMIDGYCKVGRIDEALEVFDEFRKTSISSNACYNSIINGLCKTGMVEMAIEALLELXHKGLVLDVGTYRVLMKTIFKENGSNGVLDFVYRMEGLGPDIYNAVCNDSIXLLCKRGLLEDANQLWMMMKKKCLSVTSKSYYSLLRRHLSNRNREQILPLLSSFLKEYGLVEPKVQKLIARYLCLKDVDSVLRFLGKTVENSSAVTFPVSVLKILIKEGRALDAYKLVVXAHDNLSVMDVDYAIVIRGLCKGGYLNKALDLCVFIEKKGMNSNIDIYNSIINGLCHEGCLIEAFRXFDSLENLNLIPSEITYATLIYALCRGGYLLDAEHVFRKMVLKGFQPKTQVYNSLLDGISKFGQLEKAFDLLNEMETKHIVPDSLTVSAVIDCYCRKGDMEGALEFYYKFKSKDISPDLLGFLYLIRGLCTKGRMEEARSVLREMLQSKNVAEIINXVNSEVDTESIGDFLATLCEQGSIQEAVTVLNEIARMLFPVHRLATYNQGSHKPQNIYEWKDFGSKSSSSLPSSCKDGLDFGSSDAGGNVRNLMTNNGSYLTRSQLHSFDFYYSSIAALCAKGELQEANQLAKEMLSDLTESMN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00716	90779	94012	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000716s00026203.1	PF01535.15	PPR	135	162	0.1
Glyur000716s00026203.1	PF01535.15	PPR	172	200	0.0098
Glyur000716s00026203.1	PF01535.15	PPR	208	237	0.0016
Glyur000716s00026203.1	PF13041.1	PPR_2	240	288	7.90E-09
Glyur000716s00026203.1	PF13041.1	PPR_2	309	356	1.30E-14
Glyur000716s00026203.1	PF12854.2	PPR_1	375	401	4.90E-08
Glyur000716s00026203.1	PF12854.2	PPR_1	476	506	2.00E-13
Glyur000716s00026203.1	PF13041.1	PPR_2	517	559	1.10E-07
Glyur000716s00026203.1	PF01535.15	PPR	592	614	0.37
Glyur000716s00026203.1	PF01535.15	PPR	724	751	0.16
Glyur000716s00026203.1	PF13041.1	PPR_2	757	803	1.90E-10
Glyur000716s00026203.1	PF13041.1	PPR_2	824	873	9.80E-12
Glyur000716s00026203.1	PF12854.2	PPR_1	893	922	1.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.336
SRR1783600	control	1.261
SRR1783602	moderate drought stress	1.882
SRR1811619	moderate drought stress	1.893

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.082
DRR006520	Root Summer glycyrrhizin high producing strain	1.233
DRR006521	Root Winter glycyrrhizin high producing strain	1.726
DRR006522	Root Winter glycyrrhizin high producing strain	1.779
DRR006523	Root Summer glycyrrhizin low producing strain	1.497
DRR006524	Root Summer glycyrrhizin low producing strain	1.449
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.237
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.285

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.547
SRR2868004	Drought Stress (root)	5.045
SRR2967015	Control (root)	4.259

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.905
SRR9715740	Leaf	1.005
SRR9715741	Leaf	1.982
SRR9715739	Root	0.257
SRR9715742	Root	1.799
SRR9715743	Root	1.283

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.158
SRR8749028	MeJA induced 9h	5.490
SRR8749029	MeJA induced 9h	1.450
SRR8749030	Uninduced	0.922
SRR8749031	Uninduced	0.626
SRR8749032	Uninduced	0.518

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.174
SRR8400027	Control - Root	4.881