Gene detail information of Glyur000716s00026198 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57240.2 | 3.00E-101 | OSBP(oxysterol binding protein)-related protein 4C |
| NR | XP_006597789.1 | 0 | PREDICTED: oxysterol-binding protein-related protein 4B-like [Glycine max] |
| Swissprot | tr|Q9LVD4|ORP4C_ARATH | 2.00E-131 | Oxysterol-binding protein-related protein 4C |
| trEMBL | tr|I1MH20|I1MH20_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G17800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00716 | 72277 | 80250 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000716s00026198.1 | PF01237.13 | Oxysterol_BP | 61 | 344 | 1.90E-52 |
| Glyur000716s00026198.2 | PF01237.13 | Oxysterol_BP | 72 | 355 | 2.20E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.612 |
| SRR1783600 | control | 1.585 |
| SRR1783602 | moderate drought stress | 2.982 |
| SRR1811619 | moderate drought stress | 3.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.257 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.378 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.871 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.595 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.468 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.045 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.487 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.652 |
| SRR2868004 | Drought Stress (root) | 14.202 |
| SRR2967015 | Control (root) | 12.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.889 |
| SRR9715740 | Leaf | 1.366 |
| SRR9715741 | Leaf | 3.330 |
| SRR9715739 | Root | 2.604 |
| SRR9715742 | Root | 2.883 |
| SRR9715743 | Root | 3.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.789 |
| SRR8749028 | MeJA induced 9h | 8.067 |
| SRR8749029 | MeJA induced 9h | 8.609 |
| SRR8749030 | Uninduced | 5.006 |
| SRR8749031 | Uninduced | 3.672 |
| SRR8749032 | Uninduced | 2.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.190 |
| SRR8400027 | Control - Root | 5.006 |