Gene detail

Gene detail information of Glyur000716s00026189

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57240.2	3.00E-118	OSBP(oxysterol binding protein)-related protein 4C
NR	XP_004487979.1	0	PREDICTED: oxysterol-binding protein-related protein 4B-like [Cicer arietinum]
Swissprot	tr\|Q9LVD4\|ORP4C_ARATH	2.00E-145	Oxysterol-binding protein-related protein 4C
trEMBL	tr\|Q2HUM2\|Q2HUM2_MEDTR	0	Oxysterol-binding protein {ECO:0000313\|EMBL:ABD28641.1}

Sequence

Transcript Sequence

>Glyur000716s00026189.1
TGGTGGGTGCAGCCAAACAAGGAAGAGAAAAGAGAGACAAAAATTGTGCTCACAAAGCCACTAACATTGGAAAAGGAATCTGATTCAGAAGAGGAATACAGAGCCCCTAATCTTTTGCAACGCATACTGAGTTTATTCAACAATGTACGCCCAGGATCTGATCTCACACGCTTTCAGCTGCCACCTCTGTTTAACTTACCAAAGTCACAACTTCAGTGCTATGGTGAATCAGTGTATTGCACAGCTTCAGACTTGCTAAGCAAGTGCAATAGAGGGCAGAGTCCTCTGGATAGGTTCATAGCTGTGGTAGCATGGTGCATATCTACAACACGCCCTGCAACTTTTGGGATTGCTCCTTATAATCCCATTCTTGGTGAGACACACCATGTTTCAAAGGGAAACCTTAACGTGTTACTGGAACAGATCTCACACCACCCTCCAGTAACTGCCCTCCATGCAACAGATGAGAAGGAAAACATAGAAATGATATGGTGTCAGCAACCTGTTCCAAAGTTTTATGGCACATCAGTTGAAGCTAAAGTGCATGGTAAACGGAAGCTGAAGCTTCTAAATCATGGAGAAACATATGAAATGAATTGTCCTCACCTTTTGTTTAGGATCCTTCCTATTCCTGGGGTTGATTGGGTTGGCACAGTTAATATAAGGTGCATAGAGACAGGCCTGGTAGCTGAGTTATCCTACAGATCAAGTCATTCTTTTCTAGGACTTGGGGGAAATCATAAAGTGATCAAAGGGAAGATCCTTGACTCTTCATCCTTGAAAGTTCTATATGAAGTTGATGGTCATTGGGATAGGACTGTAAAACTGAAGGATACAAAAAATGGGAATGTCAGAGTGATATATNATGCAACGAAAGTCATNTCANGGNTCCAAGCTCCTATTCTCAAGGATGCAGAGAGTGTGNGGCCAACAGAATCAGTCCATGTGTGGAGTGAATTGAGCCAAGCCATTGTGAGCAGAGAGTGGGAGAGAGCAAAGGAAGCAAAGCAAGAAGTGGAGGAGAGACAAAGGGAGTTCATGAGAGGAAGAGAGTCAAAAGGAGAAACTTGGATTCCTAAGCATTTTATGGTATCTTACAGCAAAGAACAAGGGTGGGACTGTTCACCTATTCATAACTTGGTATCAGCTGCTCCCATCATAGCCCTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00716	31541	36337	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000716s00026189.1	PF01237.13	Oxysterol_BP	44	366	1.40E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.121
SRR1783600	control	1.078
SRR1783602	moderate drought stress	1.497
SRR1811619	moderate drought stress	1.539

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.555
DRR006520	Root Summer glycyrrhizin high producing strain	0.550
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.073
DRR006524	Root Summer glycyrrhizin low producing strain	1.128
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.468
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.392

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.973
SRR2868004	Drought Stress (root)	9.675
SRR2967015	Control (root)	6.351

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.695
SRR9715740	Leaf	0.440
SRR9715741	Leaf	0.985
SRR9715739	Root	0.087
SRR9715742	Root	0.417
SRR9715743	Root	0.081

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.891
SRR8749028	MeJA induced 9h	27.082
SRR8749029	MeJA induced 9h	30.220
SRR8749030	Uninduced	7.311
SRR8749031	Uninduced	11.759
SRR8749032	Uninduced	6.556

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.873
SRR8400027	Control - Root	2.103