Gene detail

Gene detail information of Glyur000715s00031148

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09740.1	3.00E-59	Adenine nucleotide alpha hydrolases-like superfamily protein
NR	XP_003615270.1	6.37E-102	Universal stress protein A-like protein [Medicago truncatula]
COG	NP_925635.1	1.00E-16	hypothetical protein gll2689 [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q8LGG8\|USPAL_ARATH	2.00E-13	Universal stress protein A-like protein
trEMBL	tr\|B7FH01\|B7FH01_MEDTR	2.00E-102	Uncharacterized protein {ECO:0000313\|EMBL:AFK36077.1}

Sequence

Transcript Sequence

>Glyur000715s00031148.1
GTCCATTTAATTTTTTATAACATTAAATAACGGTTCTAACTTCTTGCGTACCGGTACACAAAAGTCCTCCCTGTGCACCTAAAAAAAAGCCCCAAAACGAAAGAACCAAAGTCAAAAGAAGCAGGTTATAGAGAGAGAGAGAGAAAATCGTCAATAATCGGAAGCGAGAAGCCAACGCCACAATCAATCGAGCAGTGATGTCGGAAGGAGGAAACCTGGGTGTGGCGGTGGTGGCGGTGGATGGGAGCGAGGAAAGCATGAATGGTCTACGCTGGGCGTTGGAGAATCTCAAGCTCCGATCACCTGCCACACCCGGTGATCCCACTGCCACACCCGGTTGTTTCGTCATCTTCCATGTCCAATCACCGCCCTCCATCGCCACCGGCCTCAATCCCGGTTCCATCCCCTTCGGTGGCCCCAGTGACCTTGAAGTTCCTGCGTTTACTGCAGCCATCGAAGCTCACCAGAAGCGTATCACTGATGCTATACTCGATCACGCTCTGGGGATTTGCTCTCACTTCAATTTAACTGAGACTCAGGTCAGGACCCTTGTTGTTGTTGGAGATCCAAAGGAGAAGATTTGTGAAACCGTAGAGGATTTGCATGCTGATTTGCTTGTGATGGGGTCTCGGGCATTTGGCCCTATTAAGAGGATGTTCCTGGGAAGTGTTAGCAACTACTGTGCCCACCATGCTCAGTGTCCCGTCATTATTATCAAGGAAAAGGACAGTGTCAATAAGATAAACTAATTCACCTATACTATGCTATAATGACTCGTGATGAGTAGGTGAATTGCCACATTTCAGTGCTGAGGCTGCACTTGCCCAATTGATTAGGTCAAAAGCTTCTTCATGATTCGGATTTGCATGCTTTTTGCTAGTCCTTTGCCGTAGCTCAGCTTTGAAGTTTATGTCGCCAATGCAGGTCAGATCCTGCTACAAGTATGTTGTTTTCACTATTCTGTGCGTGTGAAATTCTTGCATTTAATTTATAGTGCTTTTCACCTGTNCTATTAAATCTTTGATTGTTCTCACAAGTGATTCAAAGAGACATTTGACTCCCGAAAGTTTGTANTGATTTTTTAATCTGTACAGTGTTGTAAACAAATGTTGTATTTGTGATCATCTGCAATAAACTAGCCACTAGTCATGTAGAAATTTTCAAATTGGGTGAAGCCTCTCAGGATATGGATTGAGTGTGTCATGCTTGAATTAATGTTACTATGATTTATGTGACAAAGAAATTTAGAGTACGGTGGTTATATGGTTGATTAACTTGTAATGGAATATACAGCCTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00715	68261	71905	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006950 response to stress

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000715s00031148.1	PF00582.21	Usp	11	174	4.00E-26
Glyur000715s00031148.2	PF00582.21	Usp	11	174	4.00E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.677
SRR1783600	control	18.361
SRR1783602	moderate drought stress	19.256
SRR1811619	moderate drought stress	18.728

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.072
DRR006520	Root Summer glycyrrhizin high producing strain	15.967
DRR006521	Root Winter glycyrrhizin high producing strain	39.790
DRR006522	Root Winter glycyrrhizin high producing strain	38.560
DRR006523	Root Summer glycyrrhizin low producing strain	23.518
DRR006524	Root Summer glycyrrhizin low producing strain	24.621
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.041
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.491

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.012
SRR2868004	Drought Stress (root)	71.382
SRR2967015	Control (root)	60.245

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.338
SRR9715740	Leaf	32.543
SRR9715741	Leaf	60.502
SRR9715739	Root	7.645
SRR9715742	Root	19.905
SRR9715743	Root	16.470

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.224
SRR8749028	MeJA induced 9h	25.698
SRR8749029	MeJA induced 9h	23.629
SRR8749030	Uninduced	27.470
SRR8749031	Uninduced	21.504
SRR8749032	Uninduced	26.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.007
SRR8400027	Control - Root	52.984