Gene detail

Gene detail information of Glyur000714s00022868.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33760.1	0	tRNA synthetase class II (D, K and N) family protein
NR	XP_004503382.1	0	PREDICTED: aspartate--tRNA ligase-like isoform X1 [Cicer arietinum]
COG	YP_722047.1	0	aspartyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q6F2U9\|SYK_ORYSJ	6.00E-13	Lysine--tRNA ligase
trEMBL	tr\|I1K5N2\|I1K5N2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G34820.1}

Sequence

Transcript Sequence

>Glyur000714s00022868.2
CTCAGCTTGGATCTTCAGCAAATTTGTCTCTGTTAGAGGAATTAGTAATTTTTCATTTTTATTTTTTAAAATTTTCATTCTGTTTCTCTCTACATCAAGCTTGAATCTTTTGTTTAGGTTCTGAATATTGAAGGGAGACTTGAGGATTTTTTCCACTGGGTACCCATTATCAATTCCTTCTTTTTCATCCCCTACTGAAGAACAACATGTCTCTGTTCCTTAAAGCATTGCCTTTGATGGCCTTTCGCCCCAGACCATCCTTCTCCTTTCTCTGCAGAGTTTCCAACACCATTCCAATTGCAATTTCCAGAACCAGAACTGTCTCTTCAGTTTCTGCTTCAATACAACCACCACCTCCTGCTTCTGAAACACTCACACCCAATACTAAACCACCTTTAGCCCTCACCAAGGAACCCCTTGAATGGGTTAGAAGGACTGATTTTTGTGGTGAGTTGTCTTTAAACGATGTTGGTAAAAGGGTCCAGCTTTGTGGGTGGGTTGCCCTTCACAGGGTCCATGGTGGCCTCACATTTCTTAATCTCAGAGACCATACTGGTATTGTTCAGGTTACAACCCTTCCAGACGAATTTCCAGACGCTCATTCTGCTATCAATGACCTGAGGCTGGAGTATGTGGTTGCCATCGAAGGAATCGTCAGGTCTCGGCCAAATGAGGCAATCAACAAGAAAATGAAAACAGGCTTCATCGAGGTTGCTGCAAGAAAAGTACAAGTGTTAAATTCTGTAAATTCAAAGTTACCATTCTTAGTTACTACAGCAGATGATGCAAAAGATTCTCTTAAAGAGGAGATCCGTTTGAGGTATCGATGTCTTGATCTAAGGAGGCAGCAGATGAATTTCAACATATTGCTGCGGCATAAAGTGGTTAAACTCATACGAAGATATCTAGAAGATATACATGGTTTTGTGGAGATTGAAACTCCAATATTGTCAAGATCCACCCCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGCCAGGAACATTCTATGCCTTGCCACAAAGTCCGCAGCTATTTAAACAAATGCTAATGGTTGCTGGTTTTGATAAATATTATCAGATAGCAAGATGTTTTCGAGATGAAGATTTAAGAGCTGATAGACAACCTGAGTTCACCCAACTAGATATGGAATTGGCTTTTACTCCTTTAGAGGATATGTTGACTCTTAATGAAGAGTTGATCAGAAAGGTTTTTCTGGAACTTAAAGGTGTGGAATTACCAAACCCTTTTCCCAGGCTTACATATGCTGAAGCAATGAGTAGATATGGTTCAGACCGGCCAGATACCAGATTTGATCTTGAGTTAAAGGATGTATCTGACATTTTCTCAGGGTCTTCCTTCAAGGTTTTCTCTGATTCCTTGGAGAGTGGGGGAGTTATTAAAGTGTTATGTGTACCTTCTGGTGCAAAAAAGTACTCAAATTCAGCTCTTAAGAAAGGTGATATTTACAATGAAGCACTCAAATCTGGTGCTAAGGGTTTACCTTTCCTCAAGATATTGGAGAATGGTGATATCGAGGGAATTTCTGCATTGGTATCAAGTATGGATCCCACAACTAAAGAAAATTTGTTAAGGCGATGCTCTGCAGGACCGAGTGATCTTATTCTATTTGCAGTTGGTCATCATGCATCTGTAAATAAAACTCTTGATCGTCTTAGAGTTTATGTGGCACATGAGTTAGGTTTGATTGACCATGGAAGACATTCAATTTTGTGGATCACTGACTTTCCAATGTTTGAGTGGAATGATTCAGAGCAGAGGCTTGAGGCTCTTCATCATCCTTTCACTGCTCCAAATCCTGAAGATATGAATGACCTTGCATCTGCTCGTGCATTGGCTTATGACATGGTTTACAATGGGGTGGAGATTGGCGGGGGAAGTCTGAGAATTTATAAACGTGACATACAACAAAAAGTTTTGCAGATTGTAGGCATCTCAATGGAGCAGGCTGAAGCAAAGTTTGGCTATCTTCTTGAAGCACTTGACATGGGGGCTCCACCACATGGAGGCATAGCTTATGGGTTGGACAGATTGGTTATGTTGTTGGCTGGGGCTAATTCCATCAGGGATGTTATTGCTTTCCCAAAAACAACTACTGCACAGTGTGCACTCACCAGGTCACCATCTGAGGTGGATCCCCAGCAGCTCAAAGATCTTTCTATTACAACCTAGATAGATAGATATAAGATATTCATCTCCTCATAGTTATCTGTTGCTTAATAGTTAATATATACCCATTTTTGTACGATGGTTAGGAATAATTTATTTGTGTACATTTCATTAAATCAACATGTATTTTTTNGGAGGGATACCATGTAAACCTAATTGCTCATGTTGTTGCATCACATTTTCCGAGCCAGCCAAAACTATATTTGATATAGCAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00714	107487	114550	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01876	DARS, aspS	EC:6.1.1.12	Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process
GO:0006418 tRNA aminoacylation for protein translation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0005524 ATP binding

GO:0016874 ligase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000714s00022868.2	PF01336.20	tRNA_anti-codon	92	176	3.60E-11
Glyur000714s00022868.2	PF00152.15	tRNA-synt_2	199	639	3.00E-128
Glyur000714s00022868.2	PF02938.9	GAD	391	490	3.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.366
SRR1783600	control	12.559
SRR1783602	moderate drought stress	12.709
SRR1811619	moderate drought stress	13.312

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.256
DRR006520	Root Summer glycyrrhizin high producing strain	9.213
DRR006521	Root Winter glycyrrhizin high producing strain	14.952
DRR006522	Root Winter glycyrrhizin high producing strain	13.222
DRR006523	Root Summer glycyrrhizin low producing strain	9.751
DRR006524	Root Summer glycyrrhizin low producing strain	9.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.770
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.686

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.658
SRR2868004	Drought Stress (root)	18.988
SRR2967015	Control (root)	15.490

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.097
SRR9715740	Leaf	32.037
SRR9715741	Leaf	23.314
SRR9715739	Root	2.678
SRR9715742	Root	7.494
SRR9715743	Root	6.294

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.995
SRR8749028	MeJA induced 9h	12.669
SRR8749029	MeJA induced 9h	8.954
SRR8749030	Uninduced	7.132
SRR8749031	Uninduced	2.520
SRR8749032	Uninduced	3.152

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.644
SRR8400027	Control - Root	18.369