Gene detail information of Glyur000714s00022862.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70710.1 | 5.00E-58 | glycosyl hydrolase 9B1 |
| NR | KHN16556.1 | 2.63E-80 | Endoglucanase 8, partial [Glycine soja] |
| COG | YP_002464713.1 | 2.00E-10 | glycoside hydrolase family protein [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|Q9CAC1|GUN8_ARATH | 6.00E-69 | Endoglucanase 8 (Precursor) |
| trEMBL | tr|I1K5N5|I1K5N5_SOYBN | 9.00E-80 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00714 | 65603 | 67073 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000714s00022862.1 | PF00759.14 | Glyco_hydro_9 | 23 | 161 | 1.70E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.075 |
| SRR1783600 | control | 12.630 |
| SRR1783602 | moderate drought stress | 10.081 |
| SRR1811619 | moderate drought stress | 9.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.109 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.846 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.108 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.387 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.376 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.047 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.895 |
| SRR2868004 | Drought Stress (root) | 1.870 |
| SRR2967015 | Control (root) | 6.249 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.649 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.130 |
| SRR9715739 | Root | 1.323 |
| SRR9715742 | Root | 0.138 |
| SRR9715743 | Root | 0.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.307 |
| SRR8749028 | MeJA induced 9h | 0.012 |
| SRR8749029 | MeJA induced 9h | 1.446 |
| SRR8749030 | Uninduced | 0.088 |
| SRR8749031 | Uninduced | 0.251 |
| SRR8749032 | Uninduced | 0.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.804 |
| SRR8400027 | Control - Root | 4.172 |