Gene detail information of Glyur000714s00022860 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14870.1 | 5.00E-52 | PLANT CADMIUM RESISTANCE 2 |
| NR | NP_001236652.1 | 3.97E-80 | uncharacterized protein LOC100306298 [Glycine max] |
| Swissprot | tr|Q9LQU4|PCR2_ARATH | 7.00E-63 | Protein PLANT CADMIUM RESISTANCE 2 |
| trEMBL | tr|C6SYU2|C6SYU2_SOYBN | 1.00E-80 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU14415.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00714 | 40843 | 49749 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000714s00022860.1 | PF04749.12 | PLAC8 | 72 | 171 | 6.90E-33 |
| Glyur000714s00022860.1 | PF04749.12 | PLAC8 | 291 | 390 | 3.10E-33 |
| Glyur000714s00022860.2 | PF04749.12 | PLAC8 | 20 | 81 | 1.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.856 |
| SRR1783600 | control | 0.872 |
| SRR1783602 | moderate drought stress | 1.083 |
| SRR1811619 | moderate drought stress | 1.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.081 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.945 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.051 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.050 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.400 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.639 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 85.143 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 84.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.082 |
| SRR2868004 | Drought Stress (root) | 32.512 |
| SRR2967015 | Control (root) | 21.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 122.731 |
| SRR9715740 | Leaf | 82.866 |
| SRR9715741 | Leaf | 138.982 |
| SRR9715739 | Root | 1.959 |
| SRR9715742 | Root | 9.210 |
| SRR9715743 | Root | 8.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 102.752 |
| SRR8749028 | MeJA induced 9h | 203.274 |
| SRR8749029 | MeJA induced 9h | 175.369 |
| SRR8749030 | Uninduced | 325.313 |
| SRR8749031 | Uninduced | 249.131 |
| SRR8749032 | Uninduced | 314.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.649 |
| SRR8400027 | Control - Root | 5.095 |