Gene detail information of Glyur000714s00022859 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23220.1 | 1.00E-47 | Dynein light chain type 1 family protein |
| NR | XP_003525244.1 | 1.01E-84 | PREDICTED: dynein light chain LC6, flagellar outer arm-like [Glycine max] |
| Swissprot | tr|Q39580|DYL1_CHLRE | 6.00E-19 | Dynein 8 kDa light chain, flagellar outer arm |
| trEMBL | tr|I1K5P2|I1K5P2_SOYBN | 4.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G34910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00714 | 36869 | 38638 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000714s00022859.1 | PF01221.13 | Dynein_light | 38 | 126 | 9.50E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.414 |
| SRR1783600 | control | 5.443 |
| SRR1783602 | moderate drought stress | 3.904 |
| SRR1811619 | moderate drought stress | 4.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.777 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.769 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.644 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.653 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.309 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.110 |
| SRR2868004 | Drought Stress (root) | 5.468 |
| SRR2967015 | Control (root) | 6.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.300 |
| SRR9715740 | Leaf | 1.123 |
| SRR9715741 | Leaf | 0.769 |
| SRR9715739 | Root | 1.245 |
| SRR9715742 | Root | 1.121 |
| SRR9715743 | Root | 1.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.769 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.884 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.404 |
| SRR8400027 | Control - Root | 12.206 |