Gene detail

Gene detail information of Glyur000714s00022858

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01620.1	7.00E-46	RNI-like superfamily protein
NR	AFK36453.1	7.22E-140	unknown [Lotus japonicus]
Swissprot	tr\|Q9ZU90\|SKI28_ARATH	3.00E-54	F-box protein SKIP28
trEMBL	tr\|I3S861\|I3S861_LOTJA	3.00E-140	Uncharacterized protein {ECO:0000313\|EMBL:AFK36453.1}

Sequence

Transcript Sequence

>Glyur000714s00022858.1
CAACAGAGTGTTAATAAAATCACTTGCCACGTATATATGATATCTTCGATCGGGATCTAAATATGTTAGTTCCTTCTTGTTTGCATTTGGAGAATAATAAATTGGGAATAATCAAATATGGAAGATTCTTCCAAGGCTTCCTCCTCTCTGAGCTTTACAGTTGAGGAGGATGAGAAAGCACAAGTGCCGCCTCATGAGGCCATCTTTCTCGTGTTACCTTATCTTCCAGTGTGCGAGGTTCTCACCATGTCTCGGGTTTGCANGTCACTAAGGGATGCGGTCAACAATGATGTGTTGCCGTGGCTGAATGTTATTGTTGAAAGGCCTCTGAATTCCCGAGTCTCTGATGAGATTCTTGTGGAAATCACCTCCAAGGCCANTGGAAGGCTCAAAACATTGGCTCTGATGAACTGCATGCACGTTACCGACAAGGGCCTCCAAAGGGTNGTAGAACAAAACCCTTTCATAAACAAGCTTTATATACCTGCATGCACTGGTATAACCCCTGAAGGAGTTCTAACAGCTGTGAANACTCTCTGCCAAAGAAGCAGTTGCTTAACCACCTTGAGTATAAACGGCATCTACNACCTACAGAAGGAGCATCTTGACATGCTTGTCATGAACTTAAGAAAGAACCTTCCACTAGAGGAGCAGCAAACACAGCAGAAGCCTCTCTACTATCATAAACGCGGTAGCCTTTCGGTATTTAAGCGCGAAGAAAACCAGCGGATTATTGATTTGGAGATATGTCCTAAGTGCTTTGAGGTGAGGATGGTTTATGACTGCCCAAAAGGGGACTGCAAGAGGAAGGAATGTCCCCATGCTCAATGTAGGGGATGCNACTTTTGTATTCCAAGGTGTGAAGACTGTGGTAGATGCGTTGTATCAGAACTCAGAAGAAGTGGAAGAGGGTGCCTGTGGAGATGTCTTGTGCCTTGAATGTTGGTTAAAGCTTCCTAAGTGCAATTTCTGTAACAAACCANATTGTAAGCAGCACACAAATTGGTGGTGCACATCTTCAGACTCTTCATTCCTCTGTAAAGTTTGTGATGAAAATTCTCATGGATATACGTACAATGATGTTCTAGAATGAAAAGTGACTCACGATAAAACTTATAATAATACCATGCCTCATTGTATAAAGTTTATAGCTAAAGAAATTATTGTTAATGATGGTATTTGCATTCTTGAATTTACTTAGTTTGACTGTCTGAGTTATACTATACAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00714	34721	36291	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000714s00022858.1	PF00646.28	F-box	25	60	0.00042

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.004
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.118
SRR1811619	moderate drought stress	0.181

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.347
DRR006520	Root Summer glycyrrhizin high producing strain	0.346
DRR006521	Root Winter glycyrrhizin high producing strain	5.793
DRR006522	Root Winter glycyrrhizin high producing strain	5.485
DRR006523	Root Summer glycyrrhizin low producing strain	0.449
DRR006524	Root Summer glycyrrhizin low producing strain	0.449
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.908
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.654

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.529
SRR2868004	Drought Stress (root)	6.209
SRR2967015	Control (root)	5.582

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.574
SRR9715740	Leaf	52.538
SRR9715741	Leaf	36.901
SRR9715739	Root	0.121
SRR9715742	Root	0.000
SRR9715743	Root	0.100

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.151
SRR8749028	MeJA induced 9h	3.161
SRR8749029	MeJA induced 9h	1.661
SRR8749030	Uninduced	1.436
SRR8749031	Uninduced	2.206
SRR8749032	Uninduced	2.428

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.492
SRR8400027	Control - Root	0.849