Gene detail information of Glyur000714s00022854.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17860.1 | 2.00E-32 | jasmonate-zim-domain protein 3 |
| NR | XP_006580445.1 | 3.66E-168 | PREDICTED: protein TIFY 6B-like isoform X3 [Glycine max] |
| Swissprot | tr|Q9LVI4|TIF6B_ARATH | 7.00E-44 | Protein TIFY 6B |
| trEMBL | tr|I1K5Q2|I1K5Q2_SOYBN | 1.00E-168 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G34960.6} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00714 | 16081 | 19752 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000714s00022854.1 | PF06200.9 | tify | 175 | 210 | 2.00E-17 |
| Glyur000714s00022854.1 | PF09425.5 | CCT_2 | 309 | 333 | 2.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.175 |
| SRR1783600 | control | 35.359 |
| SRR1783602 | moderate drought stress | 23.430 |
| SRR1811619 | moderate drought stress | 23.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.759 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.124 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.728 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.352 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.790 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.235 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.724 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 55.256 |
| SRR2868004 | Drought Stress (root) | 58.639 |
| SRR2967015 | Control (root) | 69.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 58.234 |
| SRR9715740 | Leaf | 21.299 |
| SRR9715741 | Leaf | 56.760 |
| SRR9715739 | Root | 33.033 |
| SRR9715742 | Root | 43.673 |
| SRR9715743 | Root | 38.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 61.807 |
| SRR8749028 | MeJA induced 9h | 42.941 |
| SRR8749029 | MeJA induced 9h | 64.801 |
| SRR8749030 | Uninduced | 95.282 |
| SRR8749031 | Uninduced | 51.160 |
| SRR8749032 | Uninduced | 110.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 55.195 |
| SRR8400027 | Control - Root | 43.695 |