Gene detail

Gene detail information of Glyur000713s00015603.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13670.1	0	Protein kinase family protein
NR	XP_003552750.1	0	PREDICTED: serine/threonine-protein kinase VRK1-like [Glycine max]
COG	YP_005321927.1	1.00E-13	peptidase c14 caspase catalytic subunit p20 [Saprospira grandis str. Lewin]
Swissprot	tr\|P42158\|KC1D_ARATH	8.00E-33	Casein kinase I isoform delta-like
trEMBL	tr\|I1N5F2\|I1N5F2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G53810.1}

Sequence

Transcript Sequence

>Glyur000713s00015603.1
CTCAATTCGTACTTTTTATCATAACAAAAAAATCGTGCCATTAATCTTTTCGACTTTTCCCTTCTTTTCCACCCTCGTCAGAAAAAATAAAAAAAAATCTTTTTCACCTGGTACCTTCGTATCCTATTTTTTCCCCTGTAAGGGGTTCACGGTTGTCTCCTTTTCCTCTCTGTTTTTAATCTGCCATTGAGTTCTTCCTTTTCCCAACCATCAAACCCTAACCTAACCCTTATCCTTCATCTCAAAGCTCGCGAGGGATTGCTGCATCGGTTACTTGAATCTCGTGAAAGGAGCTTTTATATCTTATTTTGTTAAGTCATGATGATGAAGAATCGGATCTCAGCGCTGTGGTAAGGCATATGATGATCGGGAGGTTCCCTGCGNTGCGAATCGATTGCATGGGTTTAGAGAATGCCGGAGCTTCGTAGTGGAGTTCGACGCGGTCGTGCTGCGGCGCTAGGCCAGAAACAGAAAGGTTCGGAGCCGGCGAAGAGGAACGNGAAGACTCGAGCTCCGGCGGCGGCGGCGGGGAGGCCGAGAACTCGATTGGCGGCGAAGAAGAAGTTGGAGCAAGAGAATCCGTTGATACCGATACCTGTGCCGGATAAGGAGAAGGAGAACGAGGGAGAAGGTGTGGGCGTGATGGGTGATGAAAGTGGTGGGTTGAGTGCTAAGAAGGGTGCTGGTGCTGGTGTTGGTGTTGCCCCTGAGGATGATGCGAACACTCCACCGTTTCCAGAGAGGGTTCAAGTAGGAGGATCGCCCGTGTACAAGGTAGAGAGGAAGCTGGGCAAAGGTGGATTTGGTCAGGTTTTTGTTGGCCGTCGCGAGCGTGTGACAGGCCTTGGAGCCATGGAGGTTGCTCTGAAATTTGAACATAGAAACAGTAAAGGCTGTAGCTATGGCCCTCCTTACGAGTGGCAAGTATACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTNCACTATAAAGGAAGACAAGGAGAATATTATGTGATGGTCATGGACATGCTTGGTCCAAGTTTGTGGGATGTGTGGAATTCCTCAGGCCAGACGATGTCCGTGGAAATGGTCTCATGTATAGCTGTTGAGTCCTTATCGATACTTGAGAAGTTGCACGCCAAAGGTTATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCGGGCACAACACAAGAGAAGAAACTGTTTCTTGTAGACCTTGGATTAGCAACAAAGTGGAGAGATACCTCAAGTGGAAAGCATACTGAATATGACCAACGCCCTGATATGTTCAGAGGGACTGGTGATAGCAAATCCTTCCTTGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATGCTGTGCTGCCTTTGCCCTGGTGCTTTTAGGCAATTTCTTGAGGTTGTAGTGAGCATGAGATTTGATGAAGAACCTAACTATTCCAAGCTAATATCCTTGTTTGATGGTATGATTGGACTCAACCCNGCATTGCGGCCTCTTAATATTGATGGCGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATGTTGAACCAGAGGATGATTCACAGCCCAAAAAGAAGGTCCGTTTAGGGGTTCCTGCTTCTCAATGGATTTCAATCTACAATGCTAGACTGCCAATGAAACAAAGGTATCATTACAATGTAGCTGATACTAGATTATCGCAACATGTTGAGAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTTTCTTCTTGTTCCAATCTATGGGCACTCATTATGGATGCTGGAACTGGTTATTCAAATCAAGTTTACAAATTATCACCTTTTTTTTTACACAAGGAATGGATCTTGGAACAGTGGGATAAGAACTACTACATTACTTCTATTGCAGGGGCCAATAATGGCAGCTCTCTTGTGGTGATGTCAAAAGGTACACGGTATACTCAACAATCGTACAAAGTAAGCGACTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAAAGAAGGTTTTCAGGTCACCTCAATGGCTACTGCTGGAAGTCGATGGGGTATTGTCATGTCTCGCAATGCTGGATTCAGCGATCAGGTGGTTGAACTTGATTTTCTGTATCCAAGTGAGGGCATCCATAAGCGATGGGATGGTGGTTATAGGATTACAGCAACTGCAGCTACAAATGATCAATCTGCTCTTATATTAAGTATTCCGAGGCCCAGGCCAAGTGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCCAGCACACACGTTAAGGAAAAATGGTCAAAAAACCTTTATCTTGCCTGTTTGTGCTATGGGCGCACAGTATGCTGATTTCCTTCAAGGTCATATCATCATTTTATTGACAAAAAAAGAATTATGGATTGTCTGCTGNCCGATCAGATAACATCTTTTTGTAGAAACTAATTGTGCCAGCAGAGAACCATATCTGTTCTCTTGTTATATAGTTTATTATTATGTACCCTGCCCTTCTGTTATATGCTTTACTTTGGTTGTGGAATGTGGCAGAGTAATGTATGTGGTTTTAGCTTTATATGTTCCTTTAAAGATGTATATACTGATTTTATCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00713	117317	123010	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000713s00015603.1	PF00069.20	Pkinase	120	282	4.20E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.174
SRR1783600	control	53.691
SRR1783602	moderate drought stress	84.521
SRR1811619	moderate drought stress	84.062

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	97.062
DRR006520	Root Summer glycyrrhizin high producing strain	96.682
DRR006521	Root Winter glycyrrhizin high producing strain	91.187
DRR006522	Root Winter glycyrrhizin high producing strain	88.569
DRR006523	Root Summer glycyrrhizin low producing strain	98.399
DRR006524	Root Summer glycyrrhizin low producing strain	98.946
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.398
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.552

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	96.992
SRR2868004	Drought Stress (root)	102.783
SRR2967015	Control (root)	110.843

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.654
SRR9715740	Leaf	58.430
SRR9715741	Leaf	63.923
SRR9715739	Root	49.219
SRR9715742	Root	98.076
SRR9715743	Root	93.356

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	68.170
SRR8749028	MeJA induced 9h	72.274
SRR8749029	MeJA induced 9h	55.207
SRR8749030	Uninduced	49.141
SRR8749031	Uninduced	81.548
SRR8749032	Uninduced	76.029

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	92.987
SRR8400027	Control - Root	87.609