Gene detail

Gene detail information of Glyur000713s00015598

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12620.2	2.00E-170	Protein phosphatase 2C family protein
NR	XP_004497368.1	0	PREDICTED: probable protein phosphatase 2C 38-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LHJ9\|P2C38_ARATH	0	Probable protein phosphatase 2C 38
trEMBL	tr\|G7IAX2\|G7IAX2_MEDTR	0	Serine/threonine phosphatase family, 2C domain protein {ECO:0000313\|EMBL:AES63058.1}

Sequence

Transcript Sequence

>Glyur000713s00015598.1
GGAGTGTTGAGTTCTGGTCCAAGATATTTTCAAAAATANAAACTGCAAAGGAGAGTTTGATTTTGAGAAAAGCTGGGTTAGTTGCGGAATAGGAGAAGAGAAGGTGTCAATATTCTATATTAAGGAGANTGGAAAGTTGAGGAAAAGCAGCCTAAAATGGTGGTTGGTTGGAGGTCAAAGTCAAAACCCCACCAATGCATTTAAAAAATAGAAAACCAAAACTGCCAATCAACCTCAAAAGCCAAAAGCCCATTGGAAAACTCCCCTACCACCGAATCAAACCGAGTCCTTTTTGTTTTTGTTGTGTAATTCCTTTTTATGGAGGCAACATACAAGGAATAAGGAAAGGGAAATTAGAGAGAGAGACCATCCCAATTCTCCNACACCCCTTCCAAATCTACAAATCAAGGCTTCAACTTTCTAACACCTTCTCATCAGAAGCTGTGTCCAAACCTTAATCATCATTACCAATGATAGTGGGTTTTTAATGTATCAGAAGTTATCAAAGAACTAAAATTTCCCAACACATCTATCCAAGTAAGACTATGTAAGGCATGGTATCAGCTACATTTAGGCGAATTGTGTCACCCTGTTGGAGACCATCTTATGAGGGTGAGAATTCTAGTAGGAATGGGGATGCAACTGGACGTTTTGATGGTTTGTTGTGGTATAAAGACTCTGGAAGACACGCAAATGGCGAGTTCTCAATGGCAGTTGTTCAAGCAAACAATTTGTTGGAGGATCAAAGCCAACTTGAATCAGGCCCCATGAACTTACTGGAAGGAAGTCCTCGCGGAACTTTTGTCGGTATATACGATGGGCATGGAGGTCCAGAAGCTTCCCGGTTTGTCAATGACCGTCTATTCAAGAATGTCAAGAAATTCACTTCAGAAAATCAGGGAATGTCAGCTGATGTTATCAATAAAGCATTCTTGGCAACAGAAGAAGAATTTCTTGCTCTGGTAAAGAAGCAGTGGCTACACAAGCCACAGATAGCATCAGTTGGATCTTGCTGTTTGATAGGCATAATATATAGTGGGGAGCTCTATATTGCAAATGCAGGAGACTCTCGAGCAGTGTTNGGTAGACTGGATGAGACCACTAAAGAGATTAAAGCGATTCAACTATCCACTGAGCACAATGCTAGCCTGGAATCTGTAAGAGAGGAGTTGCGTTCGTTGCATCCCAATGATCCACAGATTGTAGTGATGAAGCACAAGGTCTGGCGTGTGAAGGGTCTGATTCAGATATCAAGATCCATTGGTGATGCCTATCTAAAGAAGGCAGAGTTTAACCAAGCACCACTTTTGCAAAAATTTCGACTCCCACAACCCTTTGAGCAGCCAATCCTTAAAGCTGAACCAACAGTACTAGTACAGAAACTCCATCCTCGCGATCAATTCCTTATATTCGCATCGGATGGATTATGGGAGCACGTCAGCAATCAAGAAGCAGTTGACATTGTCCATAGCTGTCCACGCAATGGAGTAGCCAAGAAACTGATCAAAGCTGCACTTTGTGAAGCAGCCAAGAAAAGAGAAATGAGATACTCAGACTTGAAGAAGATTGATAGGGGGGTGAGGAGACATTTCCATGATGACATCACAGTTATAGTTGTCTATATTGATTCACATCATCATCTAACAAGTTCACGTGGTCCCATCATTTCTGTCAAAGGAGGTGGTGATTTTGGCATTGGTATTGTAAATGCCTAGTTTCCTGATCCAGTTTTTCCACTTGAACTTGAACCCCCACACCAAATGTAAATTTTCCCCTCCTCATAGTCCCATACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00713	97169	100837	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000713s00015598.1	PF00481.16	PP2C	72	326	1.60E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.842
SRR1783600	control	16.123
SRR1783602	moderate drought stress	8.900
SRR1811619	moderate drought stress	8.906

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.876
DRR006520	Root Summer glycyrrhizin high producing strain	17.384
DRR006521	Root Winter glycyrrhizin high producing strain	77.720
DRR006522	Root Winter glycyrrhizin high producing strain	75.666
DRR006523	Root Summer glycyrrhizin low producing strain	22.135
DRR006524	Root Summer glycyrrhizin low producing strain	22.289
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.907
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.767

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.972
SRR2868004	Drought Stress (root)	25.848
SRR2967015	Control (root)	25.929

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.840
SRR9715740	Leaf	4.438
SRR9715741	Leaf	5.629
SRR9715739	Root	4.398
SRR9715742	Root	7.361
SRR9715743	Root	8.023

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.267
SRR8749028	MeJA induced 9h	56.578
SRR8749029	MeJA induced 9h	84.170
SRR8749030	Uninduced	79.361
SRR8749031	Uninduced	93.227
SRR8749032	Uninduced	85.608

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.394
SRR8400027	Control - Root	26.845