Gene detail

Gene detail information of Glyur000713s00015594.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55030.1	1.00E-70	phosphatidylglycerolphosphate synthase 2
NR	XP_004497372.1	2.15E-120	PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase-like [Cicer arietinum]
COG	YP_004918718.1	3.00E-43	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Methylomicrobium alcaliphilum 20Z]
Swissprot	tr\|Q9M2W3\|PGPS2_ARATH	8.00E-99	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2
trEMBL	tr\|G7IAX4\|G7IAX4_MEDTR	2.00E-115	Phosphatidylglycerolphosphate synthase {ECO:0000313\|EMBL:AES63060.1}

Sequence

Transcript Sequence

>Glyur000713s00015594.1
ATTTACTAATTGCCTTTAATTATTTTTATATTGACTAAAAATATATTTAATCCTTTAAAATTTAAAAAAGTGATTGAGGGGAGGGATCGAGCAGGTTTGTTAGGGTACGTGATTGGGGATTGATGATGTCGGCCCTGAAACTGAGCGCAACTGCTTCAATCTACGTCCGATCAGCCACCGCCAAGTCCAAAACCAAACCCCTCTNCATTTTATACACTAACAGTAACAGAACCACCCACGAACACGGGCGCAGGTACATGCCAACACTGCCTCCTTGTACAAACAGAATCCCAGTCCCAGTTCCAGTCGCNGGGTTCACAATGTTACGCAAGAGTAAGATTCCCTCTGTCTTCGACAAATTGGTGCTTTCGGGAAGGGCTCTGTGTTCCGCAGTTCCACAGCCACAGTCACAGCCAGANCAAGATCCTTCCAAATTGCTCACCTTGCCCACCATTCTCACTCTCGGCCGTGTCGCCGCCGTGCCCCTTCTTGTTGCCACTTTCTATATGGATGGTGGAACAGCCGCTACTACAAGTATTTTCATCATTGCTTCCGCTACAGACTGGCTTGATGGCTATATTGCTCGCAAGATGAAGTTGAAATCTACATTTGGTGCTTTCTTAGATCCAGTAGCTGACAAGCTTATGGTTGCTGCGACATTGGTTTTATTATGTACTAGACCTTTGGATGTTGCTTTGTTTGGGCAAGCACCCTGGCTACTCACTATACCTTCCATTGCCATAATTGGTAGAGAGATAACCATGTCTGCAGTCAGGGAATGGGCTGCTTCCCAGGATAGTAAGCTTTCAGAGGCCGTTGCTGTAAATAACTTGGGGAAGTGGAAAACAGCCACACAGATGATAGCATTAACCATCCTCCTTGCAACCCGGGACTGGAGTTATGGAGGAGCTGCCATTGTAGTAGGGTCTGGTGTTGCTTTGCTTTATGCTTCAGCAGGGCTTGCAATTTGGTCGTTGGTTGTGTATATAAGGAAAATTTGGAAGGTGTTGTTGAGGTAGCATGCTTGATGCTCCATATATTTCACATACATCCATTTTTTCTGTAGCTCCGATTCTCCCNAAAACAGTTCTTAAGTAGTATGGTTACTGATGTCATGAAAGGGGGCTGCATTTTTATTTTTTAGTGGCATGTAATGTAAATGTAATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00713	83321	86372	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00995	pgsA, PGS1	EC:2.7.8.5	Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process
GO:0008654 phospholipid biosynthetic process

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity

GO:0016780 phosphotransferase activity, for other substituted phosphate groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000713s00015594.1	PF01066.16	CDP-OH_P_transf	106	192	1.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.770
SRR1783600	control	21.370
SRR1783602	moderate drought stress	16.697
SRR1811619	moderate drought stress	15.471

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.239
DRR006520	Root Summer glycyrrhizin high producing strain	17.568
DRR006521	Root Winter glycyrrhizin high producing strain	11.177
DRR006522	Root Winter glycyrrhizin high producing strain	10.883
DRR006523	Root Summer glycyrrhizin low producing strain	10.724
DRR006524	Root Summer glycyrrhizin low producing strain	10.917
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.826

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.689
SRR2868004	Drought Stress (root)	19.693
SRR2967015	Control (root)	17.263

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.973
SRR9715740	Leaf	14.687
SRR9715741	Leaf	11.310
SRR9715739	Root	13.176
SRR9715742	Root	12.585
SRR9715743	Root	13.810

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.233
SRR8749028	MeJA induced 9h	17.179
SRR8749029	MeJA induced 9h	15.209
SRR8749030	Uninduced	5.709
SRR8749031	Uninduced	2.269
SRR8749032	Uninduced	3.362

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.439
SRR8400027	Control - Root	22.277