Gene detail information of Glyur000713s00015591 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51110.1 | 1.00E-104 | Plastid-lipid associated protein PAP / fibrillin family protein |
| NR | XP_003556560.1 | 0 | PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8LAP6|PAP12_ARATH | 4.00E-132 | Probable plastid-lipid-associated protein 12, chloroplastic (Precursor) |
| trEMBL | tr|K7N5F3|K7N5F3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G38816.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00713 | 56822 | 61376 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000713s00015591.1 | PF04755.7 | PAP_fibrillin | 53 | 174 | 4.50E-07 |
| Glyur000713s00015591.1 | PF04755.7 | PAP_fibrillin | 181 | 222 | 1.60E-11 |
| Glyur000713s00015591.2 | PF04755.7 | PAP_fibrillin | 53 | 237 | 2.50E-08 |
| Glyur000713s00015591.3 | PF04755.7 | PAP_fibrillin | 154 | 193 | 2.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.032 |
| SRR1783600 | control | 5.980 |
| SRR1783602 | moderate drought stress | 4.337 |
| SRR1811619 | moderate drought stress | 4.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.995 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.880 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.476 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.311 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.151 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.951 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 85.583 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 85.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.142 |
| SRR2868004 | Drought Stress (root) | 2.365 |
| SRR2967015 | Control (root) | 2.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 43.110 |
| SRR9715740 | Leaf | 68.826 |
| SRR9715741 | Leaf | 27.654 |
| SRR9715739 | Root | 0.474 |
| SRR9715742 | Root | 4.420 |
| SRR9715743 | Root | 2.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.690 |
| SRR8749028 | MeJA induced 9h | 13.935 |
| SRR8749029 | MeJA induced 9h | 6.777 |
| SRR8749030 | Uninduced | 7.029 |
| SRR8749031 | Uninduced | 2.932 |
| SRR8749032 | Uninduced | 4.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.277 |
| SRR8400027 | Control - Root | 9.453 |