Gene detail information of Glyur000713s00015587.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13000.1 | 0 | glucan synthase-like 12 |
| NR | XP_004497380.1 | 0 | PREDICTED: callose synthase 3-like [Cicer arietinum] |
| Swissprot | tr|Q9LXT9|CALS3_ARATH | 0 | Callose synthase 3 |
| trEMBL | tr|V7BDX1|V7BDX1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW14641.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00713 | 4707 | 43669 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT48 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000713s00015587.2 | PF04652.11 | DUF605 | 44 | 166 | 5.70E-09 |
| Glyur000713s00015587.2 | PF14288.1 | FKS1_dom1 | 316 | 399 | 1.20E-19 |
| Glyur000713s00015587.2 | PF02364.10 | Glucan_synthase | 1017 | 1336 | 4.70E-74 |
| Glyur000713s00015587.2 | PF14288.1 | FKS1_dom1 | 1773 | 1839 | 1.80E-08 |
| Glyur000713s00015587.2 | PF02364.10 | Glucan_synthase | 2430 | 2545 | 7.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.847 |
| SRR1783600 | control | 6.996 |
| SRR1783602 | moderate drought stress | 5.938 |
| SRR1811619 | moderate drought stress | 5.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.099 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.233 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.362 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.241 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.779 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.701 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.402 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.694 |
| SRR2868004 | Drought Stress (root) | 24.962 |
| SRR2967015 | Control (root) | 25.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.213 |
| SRR9715740 | Leaf | 2.859 |
| SRR9715741 | Leaf | 3.758 |
| SRR9715739 | Root | 1.731 |
| SRR9715742 | Root | 15.617 |
| SRR9715743 | Root | 13.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.581 |
| SRR8749028 | MeJA induced 9h | 13.705 |
| SRR8749029 | MeJA induced 9h | 2.877 |
| SRR8749030 | Uninduced | 0.947 |
| SRR8749031 | Uninduced | 2.392 |
| SRR8749032 | Uninduced | 0.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.991 |
| SRR8400027 | Control - Root | 26.445 |