Gene detail

Gene detail information of Glyur000711s00037596

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54270.1	1.00E-134	light-harvesting chlorophyll B-binding protein 3
NR	XP_002284493.1	0	PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera]
Swissprot	tr\|P27489\|CB23_SOLLC	6.00E-174	Chlorophyll a-b binding protein 13, chloroplastic (Precursor)
trEMBL	tr\|F6H2E4\|F6H2E4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46388.1}

Sequence

Transcript Sequence

>Glyur000711s00037596.1
TCCCTANATATGATGTTGATGTTACATGCAAACACCCCCACCCCCTCTTTCTACAAGCTTCTATGAGCCCCACTCATTTCTATCTTCTATTTAAGTAAATTAAGGTTTTCAGTTCAGGTTTCAACTGAAAGTACTTGGGATGCCATGGCATTAACAACATTGATGGCAGCCACAGCAAGCACTGGCACTGTTATTAAACCAACCGCTTTCCTTGGTCAAAGTAGGGGTACCAACACCAACCCTCTTAGAGATGTTGTCCCTGTGGGGTCTTGGAAATACACCATGGGAAATGAATTGTGGTATGGACCAGACAGAGTGAAATACTTGGGACCCTTTTCAGCTCAGACCCCTTCATACTTGACTGGGGAATTCCCAGGTGACTATGGATGGGACACTGCTGGATTGTCTGCTGACCCTGAAGCATTTGCCAGGAACAGGGCTCTNGAGGTGATTCATGGACGTTGGGCAATGCTTGGAGCACTAGGGTGCATAACCCCAGAAGTGCTTGAGAAATGGGTAAGAGTGGACTTCAAGGAGCCAGTTTGGTTCAAAGCTGGTGCTCAGATATTCTCAGAAGGTGGACTTGACTACTTAGGGAACCCAAACCTTGTCCATGCACAGAGCATCCTAGCAGTGCTAGCCTTCCAAGTGGTTCTAATGGGTCTTGNTGAAGGGTTTAGGATCAATGGACTTCCTGGGGTAGGAGAAGGTAACAACCTATACCCTGGTGGCAAGTACTTTGACCCTCTTGGCCTTGCTGATGACCCTGTCACTTTTGCTGAGCTCAAGGTTAAGGAGATCAAGAATGGGAGGCTGGCTATGTTCTCCATGTTTGGTTTCTTTGTCCAAGCCATTGTCACTGGGAAGGGNCCACTGGAGAACCTTTTGGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTCTATGCCACCAAGTTTGTGCCCGGTTCTTAAAAGGAAAATCAAAATTGATCTCCCTAGTAGTATTTGTCTGATTAGTATACCTTTTATGGTTCATCTTAAATCAGAGAGATCCCATGTAAATATGTTAAAAAAAAAAACTAAAGATTAAATATATTTTTAGTCCCTGTAAATATAAAAATGTTCGCTTTCAATCTGTCAATTTTAAAATGTTTCATTTTGATCTCTATTTTCTAAAATANGCCACATGTAATCCTTCAAATTGTCCTCAATAGGAAATACTTGTGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00711	67601	69845	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009765 photosynthesis, light harvesting

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000711s00037596.1	PF00504.16	Chloroa_b-bind	69	236	3.80E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.301
SRR1783600	control	0.271
SRR1783602	moderate drought stress	1.573
SRR1811619	moderate drought stress	1.557

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.155
DRR006520	Root Summer glycyrrhizin high producing strain	4.426
DRR006521	Root Winter glycyrrhizin high producing strain	1.103
DRR006522	Root Winter glycyrrhizin high producing strain	1.001
DRR006523	Root Summer glycyrrhizin low producing strain	2.275
DRR006524	Root Summer glycyrrhizin low producing strain	2.276
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.667
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.187

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.458
SRR2868004	Drought Stress (root)	0.939
SRR2967015	Control (root)	0.952

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	66.757
SRR9715740	Leaf	120.367
SRR9715741	Leaf	118.726
SRR9715739	Root	0.422
SRR9715742	Root	2.141
SRR9715743	Root	1.867

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.082
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.150
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.047

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.805
SRR8400027	Control - Root	0.403