Gene detail information of Glyur000710s00027837 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15350.1 | 3.00E-26 | early nodulin-like protein 17 |
| NR | XP_007023451.1 | 9.81E-79 | Early nodulin-like protein 17 isoform 2 [Theobroma cacao] |
| Swissprot | tr|Q39131|LAML_ARATH | 1.00E-31 | Lamin-like protein (Precursor) |
| trEMBL | tr|A0A061G9G3|A0A061G9G3_THECC | 4.00E-79 | Early nodulin-like protein 17 isoform 2 {ECO:0000313|EMBL:EOY26073.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00710 | 124836 | 126245 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000710s00027837.1 | PF02298.12 | Cu_bind_like | 38 | 117 | 1.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 150.121 |
| SRR1783600 | control | 150.409 |
| SRR1783602 | moderate drought stress | 32.536 |
| SRR1811619 | moderate drought stress | 32.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.784 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.415 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.437 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.513 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.171 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 50.426 |
| SRR2868004 | Drought Stress (root) | 21.767 |
| SRR2967015 | Control (root) | 30.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.411 |
| SRR9715740 | Leaf | 1.982 |
| SRR9715741 | Leaf | 6.731 |
| SRR9715739 | Root | 55.174 |
| SRR9715742 | Root | 6.544 |
| SRR9715743 | Root | 16.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.715 |
| SRR8749028 | MeJA induced 9h | 6.029 |
| SRR8749029 | MeJA induced 9h | 16.343 |
| SRR8749030 | Uninduced | 0.943 |
| SRR8749031 | Uninduced | 0.538 |
| SRR8749032 | Uninduced | 1.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 144.213 |
| SRR8400027 | Control - Root | 139.691 |