Gene detail information of Glyur000710s00027832 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48930.1 | 0 | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase |
| NR | XP_004507045.1 | 0 | PREDICTED: shikimate O-hydroxycinnamoyltransferase-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8GSM7|HST_TOBAC | 0 | Shikimate O-hydroxycinnamoyltransferase |
| trEMBL | tr|A4F1S3|A4F1S3_CLITE | 0 | Putative acyltransferase {ECO:0000313|EMBL:BAF49306.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00710 | 83240 | 87573 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13065 | E2.3.1.133, HCT | EC:2.3.1.133 | Phenylpropanoid biosynthesis | map00940 |
| Stilbenoid, diarylheptanoid and gingerol biosynthesis | map00945 | |||
| Flavonoid biosynthesis | map00941 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000710s00027832.1 | PF02458.10 | Transferase | 3 | 433 | 3.00E-114 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.388 |
| SRR1783600 | control | 38.486 |
| SRR1783602 | moderate drought stress | 40.953 |
| SRR1811619 | moderate drought stress | 40.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.912 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.206 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.872 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.912 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.837 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.313 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 56.455 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 56.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 188.025 |
| SRR2868004 | Drought Stress (root) | 290.108 |
| SRR2967015 | Control (root) | 149.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 399.025 |
| SRR9715740 | Leaf | 474.006 |
| SRR9715741 | Leaf | 631.160 |
| SRR9715739 | Root | 93.384 |
| SRR9715742 | Root | 140.246 |
| SRR9715743 | Root | 121.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 182.504 |
| SRR8749028 | MeJA induced 9h | 401.561 |
| SRR8749029 | MeJA induced 9h | 208.352 |
| SRR8749030 | Uninduced | 105.318 |
| SRR8749031 | Uninduced | 41.602 |
| SRR8749032 | Uninduced | 60.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 201.486 |
| SRR8400027 | Control - Root | 120.002 |