Gene detail information of Glyur000709s00024194 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39410.1 | 1.00E-180 | Saccharopine dehydrogenase |
| NR | XP_003621322.1 | 0 | hypothetical protein MTR_7g011890 [Medicago truncatula] |
| COG | YP_003837819.1 | 6.00E-42 | Saccharopine dehydrogenase [Micromonospora aurantiaca ATCC 27029] |
| Swissprot | tr|Q8LGI2|SCPDL_ARATH | 0 | Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 |
| trEMBL | tr|G7L350|G7L350_MEDTR | 0 | Saccharopine dehydrogenase-like protein {ECO:0000313|EMBL:AES77540.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00709 | 117847 | 122172 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000709s00024194.1 | PF03435.13 | Saccharop_dh | 20 | 162 | 1.80E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 68.081 |
| SRR1783600 | control | 69.143 |
| SRR1783602 | moderate drought stress | 27.132 |
| SRR1811619 | moderate drought stress | 26.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.983 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.870 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.069 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.146 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.065 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 237.831 |
| SRR2868004 | Drought Stress (root) | 132.677 |
| SRR2967015 | Control (root) | 137.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.967 |
| SRR9715740 | Leaf | 2.744 |
| SRR9715741 | Leaf | 7.680 |
| SRR9715739 | Root | 146.265 |
| SRR9715742 | Root | 120.288 |
| SRR9715743 | Root | 125.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 115.898 |
| SRR8400027 | Control - Root | 109.504 |