Gene detail

Gene detail information of Glyur000709s00024192

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15390.1	1.00E-108	tRNA/rRNA methyltransferase (SpoU) family protein
NR	XP_004491861.1	0	PREDICTED: tRNA (guanosine(18)-2'-O)-methyltransferase-like [Cicer arietinum]
COG	YP_003570939.1	3.00E-55	23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber M8]
trEMBL	tr\|G7L451\|G7L451_MEDTR	0	tRNA/rRNA methyltransferase SpoU family protein {ECO:0000313\|EMBL:AES77568.1}

Sequence

Transcript Sequence

>Glyur000709s00024192.1
ATGAGTGGTTGTAGCAAAACCCTGTTGTGTGCTTCACTCTCTTCCCCCTTCAAGTTCAAATGTACACCCCCACCACCCACCCTCTCTCTTTCNCTCTCTTCGCTCCTTCGCCGCCACAACAGGGCCACGTGGCGATGTTACACGTCAGCTCAAAGCGCCGCTTCTTCCATAGAAGTAGAAGAGCCCCAATCGAGGGACACCGTGTCGATGCAGCACCTGCTAACGTGCGCCGATTCCGAAGGAGTCTCCGCGCTCATGAAGATGGAACGGAAGCCACTCCTCCTTCCCGAACCTCAGGCTCGGTGGTTCCCTTACCTGGACCGATTCAGGTGCGGGAACGGCTGCGTCATCTCCAGCGCCGACATCATCGACGCCGTCTCTCCCTGCATCTCCGATACCAGGAAGCAGAGGTTCGGGAACGCCGTTCGGAACCGGAGCTACTCCGTCTGTCTCGTCGTGGAAGGCCTCTGCGATTTCGGCAACGTCTCCGCGGCNTTTCGATCCGCCGACGCCCTCGGAGTTCAGTCCGTTCACGTCGTGTCTTCTGACGCCAACAAAAGGTATAAAGATAATCGCCATGTGAGCATGGGTGCGGAGAAATGGTTGGACATTGAACTGTGGGACACTACAAAGGAGTGCTTTGAAATGTTGAAATCGCGTGGTTATCGAATTGCCACAACTCATGTGGGAATGGATGCGGTTTCTATTTATGACTTGGACTGGTCCTGTCCAACTGCAATAGTAGTCGGGAATGAAAATAGGGGTATTAGTGACGAAGCTTTGGAATTGTCAGATTTGCACTGCAGTATTCCGATGAATGGGATGGTGGACTCTTTCAATGTTTCAGTTGCTGCAGGAATCCTCATGCACCATGCTGTTTGTGATAGAATATCTCGTATGGGCTATCATGGCGATTTGACAGTAGAAGAAAGACAAATTCTACTTGCAGAGTTTTCATTGCGCCATAGCAAGAGTGCGATTAGTATCGTCGAAGATTATGCAAAGCGCAAGGCAGCATTATTGATTTAACAGCAATGTCAGGACTCAGGAAGTCAAACTGCTGCTACTCATATGGTTGCTCGTCCTTGACAAGGAGACAGGGAAGCACTAGATCATCTCCGATNGACCGATTCCAGCAAACTAGCTAAGCAAATACTACATTGTATTAGCCGAAGCATGGCGCACAAGGCTTACAGATGACAATGAAGACCTCACCATGGATTCATGGAAATACCAAGCTTTTGTTTAGACCGTAAATTATTTGCTTAACGATGTGATTACTAGCCCAATTTTCTTCGTAATAGGGAACGATGTNATCAAATGTGCAACCGATTTTTGTCAAGTTTTTGGGTATTGCTGAGTCTTAAGGACAAGAATGTTATGTTCCTAGTTCGAAGCATATTTTAACNTGCAGTAGCTTGTATTATAATCATCAAAATGCACAGGATTAAGATGCCTTATTACACTATTTAAAGTGAAAGCTCATTCTAGACGAGTCAAATTTAATGTGTTTTCCCCTTTTCTATAGAGCTAAATAAGAATATGAAATGAATGATTTGGAAATAAAATATTCATAAATTAAAAGCTCAACTAATCAATTTAGTATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00709	108761	112076	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

molecular_function

GO:0003723 RNA binding

GO:0008173 RNA methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000709s00024192.1	PF00588.14	SpoU_methylase	149	290	5.20E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.131
SRR1783600	control	10.107
SRR1783602	moderate drought stress	9.154
SRR1811619	moderate drought stress	8.905

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.119
DRR006520	Root Summer glycyrrhizin high producing strain	8.146
DRR006521	Root Winter glycyrrhizin high producing strain	4.880
DRR006522	Root Winter glycyrrhizin high producing strain	4.940
DRR006523	Root Summer glycyrrhizin low producing strain	4.150
DRR006524	Root Summer glycyrrhizin low producing strain	4.136
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.327
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.168

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.357
SRR2868004	Drought Stress (root)	4.933
SRR2967015	Control (root)	5.529

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.713
SRR9715740	Leaf	15.749
SRR9715741	Leaf	16.735
SRR9715739	Root	1.199
SRR9715742	Root	4.156
SRR9715743	Root	4.237

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.965
SRR8749028	MeJA induced 9h	2.455
SRR8749029	MeJA induced 9h	2.244
SRR8749030	Uninduced	2.991
SRR8749031	Uninduced	1.501
SRR8749032	Uninduced	1.694

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.929
SRR8400027	Control - Root	7.572